Index of /download/chromosomal_feature_files/C_albicans_SC5314

Icon  Name                                                               Last modified      Size  Description
[PARENTDIR] Parent Directory                                                                        -   
[   ] C_albicans_SC5314_haplotype_variations.tab                         2023-06-29 09:53  7.3M  
[TXT] C_albicans_SC5314_version_A22-s07-m01-r226_chromosomal_feature.tab 2024-11-17 07:04  4.1M  
[TXT] C_albicans_SC5314_A22_current_chromosomal_feature.tab              2024-11-17 07:04  4.1M  
[TXT] C_albicans_SC5314_version_A21-s02-m09-r10_chromosomal_feature.tab  2023-06-29 09:53  4.0M  
[TXT] C_albicans_SC5314_version_A19-s01-m04-r05_chromosomal_feature.tab  2023-06-29 09:53  4.0M  
[TXT] C_albicans_SC5314_A21_current_chromosomal_feature.tab              2023-06-29 09:53  4.0M  
[TXT] C_albicans_SC5314_A19_current_chromosomal_feature.tab              2023-06-29 09:53  4.0M  
[   ] ORF19_Assembly22_mapping.tab                                       2016-09-12 10:11  168K  
[DIR] archive/                                                           2024-11-17 07:03    -   

The files in this directory contain information about chromosomal
features for Candida albicans SC5314 (Assembly 21).

The notation "version_sXX-mYY-rZZ" in the filename indicates the genome version
to which data in the file corresponds. Detailed explanation about the genome
version notation can be found at: http://www.candidagenome.org/help/SequenceHelp.shtml#versions
Information pertaining to each version update for C. albicans SC5314 Assembly 21 can be found at:
http://www.candidagenome.org/cgi-bin/genomeVersionHistory.pl?seq_source=C.%20albicans%20SC5314%20Assembly%2021

The file with "current" in its names is provided as a stable filename for
automated downloads. It is identical to (technically, symbolic links to) the
corresponding versioned file.

Note: If you are using these files in conjunction with the corresponding assembly, note that both may change 
periodically, so be sure to download both the sequence and chromosomal features files at the same time.

This file is updated weekly:

C_albicans_SC5314_version_A21_sXX-mYY-rZZ_chromosomal_feature.tab

Columns within chromosomal_features.tab:

1.  Feature name (mandatory); this is the primary systematic name, if available
2.  Gene name (locus name)
3.  Aliases (multiples separated by |)
4.  Feature type
5.  Chromosome
6.  Start Coordinate
7.  Stop Coordinate
8.  Strand 
9.  Primary CGDID
10. Secondary CGDID (if any)
11. Description
12. Date Created
13. Sequence Coordinate Version Date (if any)
14. Blank
15. Blank
16. Date of gene name reservation (if any).
17. Has the reserved gene name become the standard name? (Y/N)
18. Name of S. cerevisiae ortholog(s) (multiples separated by |)

Note: As of July 28, 2010, Column 2 contains reserved gene names as well
as standard gene names.

Note: Genes that have been deleted from the current reference annotation 
set are not included in this file.


C_albicans_SC5314_A22_haplotype_B_features.tab   

This file contains information about chromosomal features in haplotype B chromosomes. 

The file has the following columns:

1. Feature name
2. Feture type
3. Gene name
4. Description
5. Chromosome
6. Start Coordinate
7. Stop Coordinate
8. Strand
9. Feature name of allele A
10.Assembly 21 name


C_albicans_SC5314_haplotype_variations.tab 

This file lists differences between haplotypes A and B.

The file has the following columns:

1. Hap A Chromosome
2. Hap A Upstream Coord
3. Hap A Downstream Coord
4. Hap B Chromosome
5. Hap B Upstream Coord
6. Hap B Downstream Coord
7. Change Type
8. Hap A Seq
9. Hap B Seq
10.Affected Features


URL: www.candidagenome.org
Contact: http://www.candidagenome.org/cgi-bin/suggestion
Funding: NIDCR at US NIH, grant number 1-R01-DE015873-01