Index of /download/gff/C_albicans_SC5314/archive
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5prime_utr_intron_A20.20121022.gff 2023-10-17 09:44 6.1K
5prime_utr_intron_A22.20140819.gff 2023-10-17 09:44 13K
5prime_utr_intron_A22.20140918.gff 2023-10-17 09:44 13K
5prime_utr_intron_A22.20141117.gff 2023-10-17 09:44 13K
5prime_utr_intron_A22.20160708.gff 2023-10-17 09:44 13K
A20_ForcheSNPs.20121022.gff 2023-10-17 09:44 80K
A22_ForcheSNPs.20140819.gff 2023-10-17 09:44 144K
A22_ForcheSNPs.20140918.gff 2023-10-17 09:44 144K
A22_ForcheSNPs.20141117.gff 2023-10-17 09:44 144K
A22_ForcheSNPs.20160708.gff 2023-10-17 09:44 144K
A22_Historic_Assemblies.20140819.gff 2023-10-17 09:44 15M
A22_Historic_Assemblies.20140918.gff 2023-10-17 09:44 15M
A22_Historic_Assemblies.20141117.gff 2023-10-17 09:44 17M
A22_Historic_Assemblies.20160708.gff 2023-10-17 09:44 17M
A22_Jones_PMID_15123810_Polymorphisms.20140819.gff 2023-10-17 09:44 15M
A22_Jones_PMID_15123810_Polymorphisms.20140918.gff 2023-10-17 09:44 15M
A22_Jones_PMID_15123810_Polymorphisms.20141117.gff 2023-10-17 09:44 15M
A22_Jones_PMID_15123810_Polymorphisms.20160708.gff 2023-10-17 09:44 15M
A22_Unannotated_transcripts_Bruno_et_al.20140819.gff 2023-10-17 09:44 265K
A22_Unannotated_transcripts_Bruno_et_al.20140918.gff 2023-10-17 09:44 264K
A22_Unannotated_transcripts_Bruno_et_al.20141117.gff 2023-10-17 09:44 264K
A22_Unannotated_transcripts_Bruno_et_al.20160708.gff 2023-10-17 09:44 264K
A22_Unannotated_transcripts_Sellam_et_al.20140819.gff 2023-10-17 09:44 740K
A22_Unannotated_transcripts_Sellam_et_al.20140918.gff 2023-10-17 09:44 740K
A22_Unannotated_transcripts_Sellam_et_al.20141117.gff 2023-10-17 09:44 739K
A22_Unannotated_transcripts_Sellam_et_al.20160708.gff 2023-10-17 09:44 739K
A22_Unannotated_transcripts_Tuch_et_al.20140819.gff 2023-10-17 09:44 539K
A22_Unannotated_transcripts_Tuch_et_al.20140918.gff 2023-10-17 09:44 539K
A22_Unannotated_transcripts_Tuch_et_al.20141117.gff 2023-10-17 09:44 538K
A22_Unannotated_transcripts_Tuch_et_al.20160708.gff 2023-10-17 09:44 538K
Assem20mapping.20121022.gff 2023-10-17 09:44 5.9M
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C_albicans_SC5314_A21_features.20100826.gff 2023-10-17 09:44 2.9M
C_albicans_SC5314_A21_features.20100830.gff 2023-10-17 09:44 3.1M
C_albicans_SC5314_A21_features.20100906.gff 2023-10-17 09:44 3.1M
C_albicans_SC5314_A21_features.20100913.gff 2023-10-17 09:44 3.1M
C_albicans_SC5314_A21_features.20100927.gff 2023-10-17 09:44 3.1M
C_albicans_SC5314_A21_features.20100929.gff 2023-10-17 09:44 3.1M
C_albicans_SC5314_A21_features.20101004.gff 2023-10-17 09:44 3.1M
C_albicans_SC5314_A21_features.20101011.gff 2023-10-17 09:44 3.1M
C_albicans_SC5314_A21_features.20101018.gff 2023-10-17 09:44 3.1M
C_albicans_SC5314_A21_features.20101025.gff 2023-10-17 09:44 3.1M
C_albicans_SC5314_A21_features.20101101.gff 2023-10-17 09:44 3.1M
C_albicans_SC5314_A21_features.20101108.gff 2023-10-17 09:44 3.1M
C_albicans_SC5314_A21_features.20101115.gff 2023-10-17 09:44 3.1M
C_albicans_SC5314_A21_features.20101122.gff 2023-10-17 09:44 2.9M
C_albicans_SC5314_A21_features.20101129.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20101206.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20101213.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20101220.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110110.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110117.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110124.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110131.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110207.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110214.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110221.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110228.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110307.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110314.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110328.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110404.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110411.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110418.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110425.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110502.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110509.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110516.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110523.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110530.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110606.gff 2023-10-17 09:44 3.2M
C_albicans_SC5314_A21_features.20110607.gff 2023-10-17 09:44 3.2M
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C_albicans_SC5314_A21_features_with_chromosome_sequences.20100826.gff.gz 2023-10-17 09:44 4.6M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20100830.gff.gz 2023-10-17 09:44 4.6M
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C_albicans_SC5314_A21_features_with_chromosome_sequences.20100913.gff.gz 2023-10-17 09:44 4.6M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20100927.gff.gz 2023-10-17 09:44 4.6M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20100929.gff.gz 2023-10-17 09:44 4.6M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20101004.gff.gz 2023-10-17 09:44 4.6M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20101011.gff.gz 2023-10-17 09:44 4.6M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20101018.gff.gz 2023-10-17 09:44 4.6M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20101025.gff.gz 2023-10-17 09:44 4.6M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20101101.gff.gz 2023-10-17 09:44 4.6M
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C_albicans_SC5314_A21_features_with_chromosome_sequences.20101115.gff.gz 2023-10-17 09:44 4.6M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20101129.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20101206.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20101213.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20101220.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20110110.gff.gz 2023-10-17 09:44 4.7M
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C_albicans_SC5314_A21_features_with_chromosome_sequences.20110228.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20110307.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20110314.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20110328.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20110404.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20110411.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20110418.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20110425.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20110502.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20110509.gff.gz 2023-10-17 09:44 4.7M
C_albicans_SC5314_A21_features_with_chromosome_sequences.20110516.gff.gz 2023-10-17 09:44 4.7M
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C_albicans_SC5314_A21_intergenic.20110328.gff 2023-10-17 09:44 1.3M
C_albicans_SC5314_A21_intergenic.20110404.gff 2023-10-17 09:44 1.3M
C_albicans_SC5314_A21_intergenic.20110411.gff 2023-10-17 09:44 1.3M
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C_albicans_SC5314_A22-s05-m01-r01_haplotype_variations.gff 2023-10-17 09:44 18M
C_albicans_SC5314_version_A19-s01-m02-r01_features.gff 2023-10-17 09:44 4.0M
C_albicans_SC5314_version_A19-s01-m03-r01_features.gff 2023-10-17 09:44 4.0M
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C_albicans_SC5314_version_A19-s01-m04-r01_features.gff 2023-10-17 09:44 8.6M
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C_albicans_SC5314_version_A19-s01-m04-r03_intergenic.gff 2023-10-17 09:44 2.1M
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C_albicans_SC5314_version_A22-s07-m01-r201_features_with_chromosome_sequences.gff.gz 2024-02-04 07:01 9.7M
C_albicans_SC5314_version_A22-s07-m01-r201_intergenic.gff 2024-02-04 07:01 2.6M
C_albicans_SC5314_version_A22-s07-m01-r202_features.gff 2024-02-25 07:01 13M
C_albicans_SC5314_version_A22-s07-m01-r202_features.gtf 2024-02-25 07:01 4.2M
C_albicans_SC5314_version_A22-s07-m01-r202_features_with_chromosome_sequences.gff.gz 2024-02-25 07:01 9.7M
C_albicans_SC5314_version_A22-s07-m01-r202_intergenic.gff 2024-02-25 07:02 2.6M
C_albicans_SC5314_version_A22-s07-m01-r203_features.gff 2024-03-03 07:01 13M
C_albicans_SC5314_version_A22-s07-m01-r203_features.gtf 2024-03-03 07:01 4.2M
C_albicans_SC5314_version_A22-s07-m01-r203_features_with_chromosome_sequences.gff.gz 2024-03-03 07:01 9.7M
C_albicans_SC5314_version_A22-s07-m01-r203_intergenic.gff 2024-03-03 07:02 2.6M
C_albicans_SC5314_version_A22-s07-m01-r204_features.gff 2024-03-10 07:01 13M
C_albicans_SC5314_version_A22-s07-m01-r204_features.gtf 2024-03-10 07:01 4.2M
C_albicans_SC5314_version_A22-s07-m01-r204_features_with_chromosome_sequences.gff.gz 2024-03-10 07:01 9.7M
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C_albicans_SC5314_version_A22-s07-m01-r205_features.gff 2024-03-17 07:01 13M
C_albicans_SC5314_version_A22-s07-m01-r205_features.gtf 2024-03-17 07:01 4.2M
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C_albicans_SC5314_version_A22-s07-m01-r205_intergenic.gff 2024-03-17 07:02 2.6M
C_albicans_SC5314_version_A22-s07-m01-r206_features.gff 2024-04-21 07:01 13M
C_albicans_SC5314_version_A22-s07-m01-r206_features.gtf 2024-04-21 07:01 4.2M
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C_albicans_SC5314_version_A22-s07-m01-r207_features.gtf 2024-05-05 07:01 4.2M
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C_albicans_SC5314_version_A22-s07-m01-r208_features.gff 2024-06-16 07:01 13M
C_albicans_SC5314_version_A22-s07-m01-r208_features.gtf 2024-06-16 07:01 4.2M
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C_albicans_SC5314_version_A22-s07-m01-r209_features.gtf 2024-06-23 07:01 4.2M
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C_albicans_SC5314_version_A22-s07-m01-r215_features.gff 2024-08-18 07:01 13M
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C_albicans_SC5314_version_A22-s07-m01-r222_features.gff 2024-10-13 07:01 13M
C_albicans_SC5314_version_A22-s07-m01-r222_features.gtf 2024-10-13 07:01 4.2M
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C_albicans_SC5314_version_A22-s07-m01-r223_features.gff 2024-10-27 07:02 13M
C_albicans_SC5314_version_A22-s07-m01-r223_features.gtf 2024-10-27 07:02 4.2M
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C_albicans_SC5314_version_A22-s07-m01-r223_intergenic.gff 2024-10-27 07:04 2.6M
C_albicans_SC5314_version_A22-s07-m01-r224_features.gff 2024-11-03 07:01 13M
C_albicans_SC5314_version_A22-s07-m01-r224_features.gtf 2024-11-03 07:01 4.2M
C_albicans_SC5314_version_A22-s07-m01-r224_features_with_chromosome_sequences.gff.gz 2024-11-03 07:01 9.7M
C_albicans_SC5314_version_A22-s07-m01-r224_intergenic.gff 2024-11-03 07:01 2.6M
C_albicans_SC5314_version_A22-s07-m01-r225_features.gff 2024-11-10 07:01 13M
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C_albicans_SC5314_version_A22-s07-m01-r226_features.gff 2024-11-17 07:01 13M
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C_albicans_SC5314_version_A22-s07-m01-r228_features.gff 2024-12-01 07:01 13M
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suspect_WO1_regions_reduced.20121022.gff 2023-10-17 09:49 42K
This directory contains archived (outdated) downloadable CGD files
in the Generic Feature Format (GFF). These files describe features
in CGD, including chromosomes, ORFs, CDSs, introns, intergenic regions, etc.
Please see http://www.sequenceontology.org/gff3.shtml for a detailed
description of the Generic Feature Format (GFF).
----------------------------------
Archived Assembly 20 files as of Oct 22 2012.
The file
candida_20.gff
contains the CGD annotation based on Assembly 20 of the
C. albicans genome sequence. It is NOT updated after Oct 6 2008.
The file
suspect_WO1_regions_reduced.gff
contains all of the regions that were flagged by the BRI as potentially derived from strain
WO-1, rather than the reference strain, SC5314. CGD compared the 1kb flanking parts of each
suspect region to Contig19 sequences and iteratively reduced the flanking region from the gap
end by 100 bp (10%) until either there was 100% identity with the contig, or 100% could
not be found. Thus, the section of the
flanking region which aligns perfectly with the contig has been removed from the suspect
list. These are the regions that appear with the label "Suspect WO1" in the Genome Browser on
the CGD web site. Please see http://www.candidagenome.org/help/Assembly20_Advisory.shtml for
additional details.
The file
Assem20mapping.gff
contains mappings of historic assemblies to Assembly 20 chromosomes. BLAST analysis was
performed to map Contigs and ORF sequences from each of the older assemblies to the Assembly 20
chromsomes. Please see http://candidagenome.org/download/mapping_historic_assemblies/
for further details on the analysis procedure and separate mapping files for individual assemblies.
The file
A20_ForcheSNPs.gff
contains all the SNP locations from Forche A, Magee PT, Magee BB, May G Genome-wide single-nucleotide
polymorphism map for Candida albicans. Eukaryotic Cell. 2004 Jun;3(3):705-14. SNP locations were
mapped to Assembly 20 chromosomes using the original marker sequences.
The file
5prime_utr_intron_A20.gff
contains the 5' UTR intron data published in the paper Mitrovich QM, Tuch BB, Guthrie
C, Johnson AD. Computational and experimental approaches double the number
of known introns in the pathogenic yeast Candida albicans. Genome Res.
2007 Apr;17(4):492-502. These introns are mapped to Assembly 20.