Index of /download/homology/best_hits
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C_albicans_SC5314_A_nidulans_best_hits.txt 23-Aug-2019 04:45 117K
C_albicans_SC5314_C_auris_B8441_best_hits.txt 23-Aug-2019 04:48 39K
C_albicans_SC5314_C_dubliniensis_CD36_best_hits.txt 23-Aug-2019 04:48 12K
C_albicans_SC5314_C_glabrata_CBS138_best_hits.txt 23-Aug-2019 04:49 73K
C_albicans_SC5314_C_parapsilosis_CDC317_best_hits.txt 23-Aug-2019 04:49 26K
C_albicans_SC5314_N_crassa_best_hits.txt 23-Aug-2019 04:47 133K
C_albicans_SC5314_S_cerevisiae_best_hits.txt 23-Aug-2019 04:41 36K
C_albicans_SC5314_S_pombe_best_hits.txt 23-Aug-2019 04:43 89K
C_auris_B8441_A_nidulans_best_hits.txt 23-Aug-2019 05:18 105K
C_auris_B8441_CDC317_A_nidulans_best_hits.txt 01-Aug-2019 17:13 0
C_auris_B8441_C_albicans_SC5314_best_hits.txt 23-Aug-2019 05:21 21K
C_auris_B8441_C_dubliniensis_CD36_best_hits.txt 23-Aug-2019 05:21 24K
C_auris_B8441_C_glabrata_CBS138_best_hits.txt 23-Aug-2019 05:22 64K
C_auris_B8441_C_parapsilosis_CDC317_best_hits.txt 23-Aug-2019 05:22 27K
C_auris_B8441_N_crassa_best_hits.txt 23-Aug-2019 05:20 119K
C_auris_B8441_S_cerevisiae_best_hits.txt 23-Aug-2019 05:15 32K
C_auris_B8441_S_pombe_best_hits.txt 23-Aug-2019 05:16 76K
C_dubliniensis_CD36_A_nidulans_best_hits.txt 23-Aug-2019 04:53 109K
C_dubliniensis_CD36_C_albicans_SC5314_best_hits.txt 23-Aug-2019 04:55 9.8K
C_dubliniensis_CD36_C_auris_B8441_best_hits.txt 23-Aug-2019 04:56 36K
C_dubliniensis_CD36_C_glabrata_CBS138_best_hits.txt 23-Aug-2019 04:57 68K
C_dubliniensis_CD36_C_parapsilosis_CDC317_best_hits.txt 23-Aug-2019 04:57 21K
C_dubliniensis_CD36_N_crassa_best_hits.txt 23-Aug-2019 04:55 122K
C_dubliniensis_CD36_S_cerevisiae_best_hits.txt 23-Aug-2019 04:50 34K
C_dubliniensis_CD36_S_pombe_best_hits.txt 23-Aug-2019 04:51 84K
C_glabrata_CBS138_A_nidulans_best_hits.txt 23-Aug-2019 05:01 107K
C_glabrata_CBS138_C_albicans_SC5314_best_hits.txt 23-Aug-2019 05:04 57K
C_glabrata_CBS138_C_auris_B8441_best_hits.txt 23-Aug-2019 05:04 72K
C_glabrata_CBS138_C_dubliniensis_CD36_best_hits.txt 23-Aug-2019 05:05 63K
C_glabrata_CBS138_C_parapsilosis_CDC317_best_hits.txt 23-Aug-2019 05:06 69K
C_glabrata_CBS138_N_crassa_best_hits.txt 23-Aug-2019 05:03 120K
C_glabrata_CBS138_S_cerevisiae_best_hits.txt 23-Aug-2019 04:58 32K
C_glabrata_CBS138_S_pombe_best_hits.txt 23-Aug-2019 04:59 75K
C_parapsilosis_CDC317_A_nidulans_best_hits.txt 23-Aug-2019 05:10 117K
C_parapsilosis_CDC317_C_albicans_SC5314_best_hits.txt 23-Aug-2019 05:13 23K
C_parapsilosis_CDC317_C_auris_B8441_best_hits.txt 23-Aug-2019 05:13 44K
C_parapsilosis_CDC317_C_dubliniensis_CD36_best_hits.txt 23-Aug-2019 05:14 25K
C_parapsilosis_CDC317_C_glabrata_CBS138_best_hits.txt 23-Aug-2019 05:15 74K
C_parapsilosis_CDC317_N_crassa_best_hits.txt 23-Aug-2019 05:13 132K
C_parapsilosis_CDC317_S_cerevisiae_best_hits.txt 23-Aug-2019 05:07 39K
C_parapsilosis_CDC317_S_pombe_best_hits.txt 23-Aug-2019 05:08 89K
This directory contains data related to homology among C. albicans, C. auris,
C. dubliniensis, C. glabrata, C. parapsilosis, and between Candida species
and other organisms.
The orthology subdirectory contains data pertaining to orthology
mappings among Candida species in CGD and between Candida
species and model yeasts S. cerevisiae and S. pombe.
The best_hits subdirectory contains BLASTP-based mappings, which are
made with lower-stringency requirements compared to the ortholog
mappings. If a protein lacks an ortholog in one of the other species,
we search to see if there is a best-hit.
The format of the pairwise ortholog and Best Hit files (updated
September 2012) contains three tab-delimited columns for each
organism.
For each organism, the columns display:
- the systematic name of the gene
- the standard/genetic name of the gene (if one exists)
- the database identifier for the gene
The specific procedures used for generation of these mappings is described here:
http://www.candidagenome.org/cgi-bin/reference/reference.pl?dbid=CAL0142012
These best hits data are available in the same format as the files containing
the ortholog data. The ortholog files are available at
http://www.candidagenome.org/download/homology/orthologs/