Index of /download/homology/best_hits

Icon  Name                                                    Last modified      Size  Description
[DIR] Parent Directory                                                             -   
[TXT] C_albicans_SC5314_A_nidulans_best_hits.txt              20-Jan-2017 11:31  117K  
[TXT] C_albicans_SC5314_C_dubliniensis_CD36_best_hits.txt     20-Jan-2017 11:33   12K  
[TXT] C_albicans_SC5314_C_glabrata_CBS138_best_hits.txt       20-Jan-2017 11:34   74K  
[TXT] C_albicans_SC5314_C_parapsilosis_CDC317_best_hits.txt   20-Jan-2017 11:35   26K  
[TXT] C_albicans_SC5314_N_crassa_best_hits.txt                20-Jan-2017 11:33  133K  
[TXT] C_albicans_SC5314_S_cerevisiae_best_hits.txt            20-Jan-2017 11:27   36K  
[TXT] C_albicans_SC5314_S_pombe_best_hits.txt                 20-Jan-2017 11:29   82K  
[TXT] C_dubliniensis_CD36_A_nidulans_best_hits.txt            20-Jan-2017 11:39  108K  
[TXT] C_dubliniensis_CD36_C_albicans_SC5314_best_hits.txt     20-Jan-2017 11:41  9.8K  
[TXT] C_dubliniensis_CD36_C_glabrata_CBS138_best_hits.txt     20-Jan-2017 11:42   69K  
[TXT] C_dubliniensis_CD36_C_parapsilosis_CDC317_best_hits.txt 20-Jan-2017 11:42   21K  
[TXT] C_dubliniensis_CD36_N_crassa_best_hits.txt              20-Jan-2017 11:41  122K  
[TXT] C_dubliniensis_CD36_S_cerevisiae_best_hits.txt          20-Jan-2017 11:36   34K  
[TXT] C_dubliniensis_CD36_S_pombe_best_hits.txt               20-Jan-2017 11:37   77K  
[TXT] C_glabrata_CBS138_A_nidulans_best_hits.txt              20-Jan-2017 11:46  106K  
[TXT] C_glabrata_CBS138_C_albicans_SC5314_best_hits.txt       20-Jan-2017 11:49   57K  
[TXT] C_glabrata_CBS138_C_dubliniensis_CD36_best_hits.txt     20-Jan-2017 11:50   63K  
[TXT] C_glabrata_CBS138_C_parapsilosis_CDC317_best_hits.txt   20-Jan-2017 11:50   69K  
[TXT] C_glabrata_CBS138_N_crassa_best_hits.txt                20-Jan-2017 11:48  119K  
[TXT] C_glabrata_CBS138_S_cerevisiae_best_hits.txt            20-Jan-2017 11:43   32K  
[TXT] C_glabrata_CBS138_S_pombe_best_hits.txt                 20-Jan-2017 11:44   68K  
[TXT] C_parapsilosis_CDC317_A_nidulans_best_hits.txt          20-Jan-2017 11:54  117K  
[TXT] C_parapsilosis_CDC317_C_albicans_SC5314_best_hits.txt   20-Jan-2017 11:57   23K  
[TXT] C_parapsilosis_CDC317_C_dubliniensis_CD36_best_hits.txt 20-Jan-2017 11:57   25K  
[TXT] C_parapsilosis_CDC317_C_glabrata_CBS138_best_hits.txt   20-Jan-2017 11:58   75K  
[TXT] C_parapsilosis_CDC317_N_crassa_best_hits.txt            20-Jan-2017 11:57  132K  
[TXT] C_parapsilosis_CDC317_S_cerevisiae_best_hits.txt        20-Jan-2017 11:51   39K  
[TXT] C_parapsilosis_CDC317_S_pombe_best_hits.txt             20-Jan-2017 11:52   81K  


This directory contains data related to homology among C. albicans, C. dubliniensis, 
C. glabrata, C. parapsilosis, and between Candida species and other organisms.

The orthology subdirectory contains data pertaining to orthology
mappings among Candida species in CGD and between Candida 
species and model yeasts S. cerevisiae and S. pombe. 

The best_hits subdirectory contains BLASTP-based mappings, which are
made with lower-stringency requirements compared to the ortholog
mappings.  If a protein lacks an ortholog in one of the other species,
we search to see if there is a best-hit.

The format of the pairwise ortholog and Best Hit files (updated
September 2012) contains three tab-delimited columns for each
organism.
For each organism, the columns display:
- the systematic name of the gene
- the standard/genetic name of the gene (if one exists)
- the database identifier for the gene

The specific procedures used for generation of these mappings is described here:
http://www.candidagenome.org/cgi-bin/reference/reference.pl?dbid=CAL0142012
These best hits data are available in the same format as the files containing
the ortholog data. The ortholog files are available at
http://www.candidagenome.org/download/homology/orthologs/