Index of /download/misc

Icon  Name                                   Last modified      Size  Description
[PARENTDIR] Parent Directory                                            -   
[   ] CGD_GO_genespring_format.tab           2024-12-16 03:00  2.3M  
[   ] C_albicans_SC5314_A22_variation.vcf.gz 2023-06-29 09:53  3.0M  
[TXT] C_albicans_codon_usage.tab             2009-02-02 10:53  4.0K  
[   ] EMBL.tar.gz                            2023-06-29 09:53   13M  
[   ] orf6_long_desc_plus_GO.txt.gz          2024-12-15 18:53  591K  
[   ] orf6_short_desc.txt.gz                 2024-12-15 18:53  173K  


-------------------------------------- 
Codon usage table for Candida albicans SC5314 Assembly 21

This table was produced with the GCG program CodonFrequency using the
orf_coding_assembly21.fasta.gz file dated 20-Sep-2007.


-------------------------------------- 
orf6_short_desc.txt.gz
orf6_long_desc_plus_GO.txt.gz

The orf6_short_desc.txt and orf6_long_desc_plus_GO.txt files contain
basic information about C. albicans SC5314 genes in CGD.  
These files are updated on a weekly basis.

The contents of each file are as follows:

File orf6_short_desc.txt:

Column 1 : orf6 identifier 
Column 2 : orf19 identifier 
Column 3 : Gene name, if there is one 
Column 4 : Description from CGD Locus page, truncated at the first
semi-colon

File orf6_long_desc_plus_GO.txt:

Column 1 : orf6 identifier 
Column 2 : orf19 identifier 
Column 3 : Gene name, if there is one 
Column 4 : Description from CGD Locus page 
Column 5 : Biological process GO annotations, joined by '||' 
Column 6 : Cellular component GO annotations, joined by '||' 
Column 6 : Molecular function GO annotations, joined by '||'


The files are gzip compressed tab-delimited text files.  There are
several freely available software options for decompressing gzipped
files using Windows.  The software and other useful information is
available on these web sites:

- WinZip (http://www.winzip.com/) - Stuffit (http://www.stuffit.com/) -
Gzip (http://www.gzip.org/

and the gzip user's manual:
http://www.math.utah.edu/docs/info/gzip_toc.html

------------------------------------

CGD_GO_genespring_format.tab

File containing curated Gene Ontology information from the multispecies CGD gene_association
file (see http://www.candidagenome.org/download/go/gene_association_README.txt)
in a format for use with GeneSpring software
(http://www.chem.agilent.com/scripts/pds.asp?lpage=27881).  

This file is updated on a weekly basis.

The first column contains the systematic name, and
the second column contains a pipe-delimited list of GOIDs.