Index of /download/protein_properties

Icon  Name                                         Last modified      Size  Description
[PARENTDIR] Parent Directory                                                  -   
[   ] C_parapsilosis_CDC317_protein_properties.tab 2023-06-29 09:53  1.1M  
[   ] C_glabrata_CBS138_protein_properties.tab     2023-06-29 09:53  1.0M  
[   ] C_dubliniensis_CD36_protein_properties.tab   2023-06-29 09:53  1.1M  
[   ] C_auris_B8441_protein_properties.tab         2023-06-29 09:53  947K  
[   ] C_albicans_SC5314_protein_properties.tab     2023-06-29 09:53  1.1M  

This directory contains protein physicochemical property information for the
Candida species curated at CGD. The information is provided in a tab-delimited
file for each species:

C_albicans_SC5314_protein_properties.tab
C_auris_B8441_protein_properties.tab
C_dubliniensis_CD36_protein_properties.tab
C_glabrata_CBS138_protein_properties.tab
C_parapsilosis_CDC317_protein_properties.tab

PLEASE NOTE: Properties are not calculated for a feature if the corresponding
coding sequence contains ambiguous bases or internal stop codons.

The data columns are listed below.  Descriptions of the different protein properties
and how they were calculated can be found here:

http://www.candidagenome.org/help/Protein_Properties.shtml


FEATURE_NAME (systematic ORF name in CGD)
DBID (Unique CGD ID)
GENE_NAME
MOLECULAR_WEIGHT
PI (Protein isoelectric point)
CAI (Codon Adaptation Index)
PROTEIN_LENGTH
N_TERM_SEQ (The 7 amino-terminal residues)
C_TERM_SEQ (The 7 carboxy-terminal residues)
CODON_BIAS
FOP_SCORE (Frequency of Optimal Codons)
GRAVY_SCORE (Hydropathicity of Protein)
AROMATICITY_SCORE (Frequency of aromatic amino acids: Phe, Tyr, Trp)
ALA (Number of alanine residues in protein)
ARG (Number of arginine residues in protein)
ASN (Number of asparagine residues in protein)
ASP (Number of aspartate residues in protein)
CYS (Number of cysteine residues in protein)
GLN (Number of glutamine residues in protein)
GLU (Number of glutamate residues in protein)
GLY (Number of glycine residues in protein)
HIS (Number of histidine residues in protein)
ILE (Number of isoleucine residues in protein)
LEU (Number of leucine residues in protein)
LYS (Number of lysine residues in protein)
MET (Number of methionine residues in protein)
PHE (Number of phenylalanine residues in protein)
PRO (Number of proline residues in protein)
THR (Number of threonine residues in protein)
SER (Number of serine residues in protein)
TRP (Number of tryptophan residues in protein)
TYR (Number of tyrosine residues in protein)
VAL (Number of valine residues in protein)
ALIPHATIC_INDEX
INSTABILITY_INDEX
EXT_COEFF_OX (Fully oxidized extinction coefficient -- ALL cys residues are half-cystines)
EXT_COEFF_RED (Fully reduced extinction coefficient -- NO cys residues are half-cystines)
CARBON (Total number of carbon atoms in protein)
HYDROGEN (Total number of hydrogen atoms in protein)
NITROGEN (Total number of nitrogen atoms in protein)
OXYGEN (Total number of oxygen atoms in protein)
SULPHUR (Total number of sulphur atoms in protein)