Index of /download/sequence

Icon  Name                         Last modified      Size  Description
[PARENTDIR] Parent Directory                                  -   
[DIR] NCBI/                        2023-06-29 09:54    -   
[DIR] L_elongisporus_NRLL_YB-4239/ 2023-06-29 09:54    -   
[DIR] D_hansenii_CBS767/           2023-06-29 09:54    -   
[DIR] C_tropicalis_MYA-3404/       2023-06-29 09:54    -   
[DIR] C_parapsilosis_CDC317/       2023-06-29 09:54    -   
[DIR] C_orthopsilosis_Co_90-125/   2023-06-29 09:54    -   
[DIR] C_lusitaniae_CBS6936/        2023-06-29 09:54    -   
[DIR] C_lusitaniae_ATCC_42720/     2023-06-29 09:54    -   
[DIR] C_guilliermondii_ATCC_6260/  2023-06-29 09:54    -   
[DIR] C_glabrata_CBS138/           2023-06-29 09:54    -   
[DIR] C_dubliniensis_CD36/         2023-06-29 09:54    -   
[DIR] C_auris_B8441/               2023-06-29 09:54    -   
[DIR] C_auris_B11221/              2023-06-29 09:54    -   
[DIR] C_albicans_WO-1/             2023-06-29 09:54    -   
[DIR] C_albicans_SC5314/           2023-06-29 09:54    -   

The /download/sequence/ directory contains sequences from the genome
sequencing projects for Candida albicans SC5314 and other related
strains and species:

Candida albicans WO-1
Candida auris B8441
Candida dubliniensis CD36
Candida glabrata CBS138
Candida guilliermondii ATCC 6260
Candida lusitaniae ATCC 42720
Candida orthopsilosis Co 90-125
Candida parapsilosis CDC 317
Candida tropicalis MYA-3404
Debaryomyces hansenii CBS767
Lodderomyces elongisporus NRLL YB-4239

For Candida albicans SC5314, Candida auris B8441, Candida dubliniensis CD36,
Candida glabrata CBS138, and Candida parapsilosis CDC 317, current files are
generated weekly and reflect the most current information at CGD. For related
strains and species, sequences are downloaded periodically from the source
databases.  Check the "README" files in the respective directories for the
source database and most recent update.

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Sources of sequence-based information in CGD

    Candida albicans SC5314 was sequenced by the Stanford Genome
Technology Center (Jones et al., 2004, PNAS 101:7329-7334) and the
Biotechnology Research Institute of the National Research Council of
Canada (Hoog et al., 2007, Genome Biol 8:R52). Please see the CGD
Sequence Documentation for more details,
http://www.candidagenome.org/help/SequenceHelp.shtml.

    C. auris B8441 was sequenced by the Centers for Disease Control
and Prevention (Lockhart et al. 2017, Clinical Infectious Diseases 2017:64:134-140).
Sequence and annotation obtained by CGD from GenBank,
https://www.ncbi.nlm.nih.gov/assembly/GCA_002759435.2

    Candida albicans WO-1 was sequenced by the Broad Institute (Butler
et al. 2009, Nature 459:657-662). Sequence and annotation obtained by
CGD from The Broad Institute,
http://www.broadinstitute.org/annotation/genome/candida_group/MultiDownloads.html.

    Candida dubliniensis CD36 was sequenced by the Wellcome Trust
Sanger Institute (Jackson et al., 2009, Genome
Res. 19:2231-2244). Sequence and annotation obtained by CGD from EBI,
http://www.ebi.ac.uk/ena/data/view/Project:34697.

    Candida glabrata CBS138 was sequenced by Genolevures (Dujon et
al., 2004, Nature 430:35-44; Koszul et al., 2003, FEBS
Lett. 534(1-3):39-48). Genomic and mitochondrial sequence and
annotation obtained by CGD from EBI;
http://www.ebi.ac.uk/ena/data/view/Project:13831,
http://www.ebi.ac.uk/ena/data/view/Project:12136. Please note that the
alternate designations ATCC 2001 and CBS138 refer to the same strain
of C. glabrata.

    Candida guilliermondii ATCC 6260 was sequenced by the Broad
Institute (Butler et al. 2009, Nature 459:657-662). Sequence and
annotation obtained by CGD from The Broad Institute,
http://www.broadinstitute.org/annotation/genome/candida_group/MultiDownloads.html.

    Candida lusitaniae ATCC 42720 was sequenced by the Broad Institute
(Butler et al. 2009, Nature 459:657-662). Sequence and annotation
obtained by CGD from The Broad Institute,
http://www.broadinstitute.org/annotation/genome/candida_group/MultiDownloads.html.

    Candida orthopsilosis Co 90-125 was sequenced as described by Riccombeni 
et al., 2012 (PLoS ONE 7(4): e35750).  Sequence and annotation obtained by
CGD on 5/15/2012 from EBI, http://www.ebi.ac.uk/ena/data/view/Project:83665.

    Candida parapsilosis CDC 317 was sequenced by the Wellcome Trust
Sanger Institute (Butler et al. 2009, Nature 459:657-662). Sequence
and annotation obtained by CGD from GenBank,
http://www.ncbi.nlm.nih.gov/bioproject?Db=nuccore&DbFrom=bioproject&Cmd=Link&IdsFromResult=32889

    Candida tropicalis MYA-3404 was sequenced by the Broad Institute
(Butler et al. 2009, Nature 459:657-662). Sequence and annotation
obtained by CGD from The Broad Institute,
http://www.broadinstitute.org/annotation/genome/candida_group/MultiDownloads.html.

    Debaryomyces hansenii CBS767 was sequenced by Genolevures (DuJon
et al., 2004, Nature 430:35-44). Sequence and annotation obtained by
CGD from EBI, http://www.ebi.ac.uk/ena/data/view/Project:13832.

    Lodderomyces elongisporus NRLL YB-4239 was sequenced by the Broad
Institute (Butler et al. 2009, Nature 459:657-662). Sequence and
annotation obtained by CGD from The Broad Institute,
http://www.broadinstitute.org/annotation/genome/candida_group/MultiDownloads.html.

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All files are gzip compressed. There are several freely available
software options for decompressing gzipped files using Windows.  The
software and other useful information is available on these web sites:
- WinZip (http://www.winzip.com/)
- Stuffit (http://www.stuffit.com/)
- Gzip (http://www.gzip.org/
   
and the gzip user's manual:
http://www.math.utah.edu/docs/info/gzip_toc.html

Additional sequence documentation is found on the CGD web site at:
http://www.candidagenome.org/help/SequenceHelp.shtml

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