Index of /download/sequence/C_auris_B11221/current

Icon  Name                                                Last modified      Size  Description
[PARENTDIR] Parent Directory                                                         -   
[   ] C_auris_B11221_orf_trans_all.fasta.gz               2023-06-29 09:54  1.8M  
[   ] C_auris_B11221_orf_coding.fasta.gz                  2023-06-29 09:54  2.7M  
[   ] C_auris_B11221_orf_genomic_1000.fasta.gz            2023-06-29 09:54  6.0M  
[   ] C_auris_B11221_other_features_genomic_1000.fasta.gz 2023-06-29 09:54  122K  
[   ] C_auris_B11221_other_features_genomic.fasta.gz      2023-06-29 09:54  6.1K  
[   ] C_auris_B11221_orf_genomic.fasta.gz                 2023-06-29 09:54  2.7M  
[   ] C_auris_B11221_other_features_no_introns.fasta.gz   2023-06-29 09:54  6.3K  
[   ] C_auris_B11221_not_feature.fasta.gz                 2023-06-29 09:54  1.4M  
[   ] C_auris_B11221_chromosomes.fasta.gz                 2023-06-29 09:54  3.8M  

This directory contains the current version of Candida auris B11221
genomic sequences.

Sequencing described in Munoz et al. 2018 (PMID 30559369). Sequence and annotation obtained from NCBI.

Last updated on  2019-12-17

* Chromosomal sequence:
                C_auris_B11221_chromosomes.fasta.gz

* Sequence with no introns for all ORFs:
                C_auris_B11221_orf_coding.fasta.gz

* Sequence with introns for all ORFs:
                C_auris_B11221_orf_genomic.fasta.gz

* Sequence with introns and flanking 1000 bp upstream and
downstream for all ORFs:
                C_auris_B11221_orf_genomic_1000.fasta.gz

* Translation of all ORFs:
                C_auris_B11221_orf_trans_all.fasta.gz

* Sequence of other genomic features, including any introns:
                C_auris_B11221_other_features_genomic.fasta.gz
Note: Currently for Candida auris B11221, these feature types are included in this file:
                pseudogene
                rRNA
                tRNA

* Sequence of the above genomic features, with any introns removed:
                C_auris_B11221_other_features_no_introns.fasta.gz

* Sequence of the above genomic features, plus region 1000 bp upstream and downstream:
                C_auris_B11221_other_features_genomic_1000.fasta.gz

* Sequence between annotated chromosomal features:
                C_auris_B11221_not_feature.fasta.gz
Note: Features excluded from this file include:
                Protein Coding Sequence
                pseudogene
                rRNA
                tRNA

The files in this directory are in FASTA format.

All files are gzip compressed. There are several freely available
software options for decompressing gzipped files.  The software 
and other useful information is available on these web sites:
- WinZip (http://www.winzip.com/)
- Stuffit (http://www.stuffit.com/)
- Gzip (http://www.gzip.org/

and the gzip user's manual:
http://www.math.utah.edu/docs/info/gzip_toc.html

Additional sequence documentation is found on the CGD web site at:
http://www.candidagenome.org/help/SequenceHelp.shtml

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