Index of /download/sequence/C_orthopsilosis_Co_90-125/current

Icon  Name                                                           Last modified      Size  Description
[PARENTDIR] Parent Directory                                                                    -   
[   ] C_orthopsilosis_Co_90-125_orf_genomic_1000.fasta.gz            2023-06-29 09:54  6.3M  
[   ] C_orthopsilosis_Co_90-125_chromosomes.fasta.gz                 2023-06-29 09:54  3.7M  
[   ] C_orthopsilosis_Co_90-125_orf_genomic.fasta.gz                 2023-06-29 09:54  2.9M  
[   ] C_orthopsilosis_Co_90-125_orf_coding.fasta.gz                  2023-06-29 09:54  2.9M  
[   ] C_orthopsilosis_Co_90-125_orf_trans_all.fasta.gz               2023-06-29 09:54  2.0M  
[   ] C_orthopsilosis_Co_90-125_not_feature.fasta.gz                 2023-06-29 09:54  1.3M  
[   ] C_orthopsilosis_Co_90-125_other_features_genomic_1000.fasta.gz 2023-06-29 09:54   82K  
[   ] C_orthopsilosis_Co_90-125_other_features_no_introns.fasta.gz   2023-06-29 09:54   14K  
[   ] C_orthopsilosis_Co_90-125_other_features_genomic.fasta.gz      2023-06-29 09:54   14K  

This directory contains the current version of Candida orthopsilosis Co 90-125
genomic sequences.

Sequence and annotation obtained from EBI.

Last updated on  2013-12-11

* Chromosomal sequence:
                C_orthopsilosis_Co_90-125_chromosomes.fasta.gz

* Sequence with no introns for all ORFs:
                C_orthopsilosis_Co_90-125_orf_coding.fasta.gz

* Sequence with introns for all ORFs:
                C_orthopsilosis_Co_90-125_orf_genomic.fasta.gz

* Sequence with introns and flanking 1000 bp upstream and
downstream for all ORFs:
                C_orthopsilosis_Co_90-125_orf_genomic_1000.fasta.gz

* Translation of all ORFs:
                C_orthopsilosis_Co_90-125_orf_trans_all.fasta.gz

* Sequence of other genomic features, including any introns:
                C_orthopsilosis_Co_90-125_other_features_genomic.fasta.gz
Note: Currently for Candida orthopsilosis Co 90-125, these feature types are included in this file:
                ncRNA
                pseudogene
                rRNA
                tRNA

* Sequence of the above genomic features, with any introns removed:
                C_orthopsilosis_Co_90-125_other_features_no_introns.fasta.gz

* Sequence of the above genomic features, plus region 1000 bp upstream and downstream:
                C_orthopsilosis_Co_90-125_other_features_genomic_1000.fasta.gz

* Sequence between annotated chromosomal features:
                C_orthopsilosis_Co_90-125_not_feature.fasta.gz
Note: Features excluded from this file include:
                Protein Coding Sequence
                ncRNA
                pseudogene
                rRNA
                tRNA

The files in this directory are in FASTA format.

All files are gzip compressed. There are several freely available
software options for decompressing gzipped files.  The software 
and other useful information is available on these web sites:
- WinZip (http://www.winzip.com/)
- Stuffit (http://www.stuffit.com/)
- Gzip (http://www.gzip.org/

and the gzip user's manual:
http://www.math.utah.edu/docs/info/gzip_toc.html

Additional sequence documentation is found on the CGD web site at:
http://www.candidagenome.org/help/SequenceHelp.shtml

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