Index of /download/sequence/C_parapsilosis_CDC317/current
Name Last modified Size Description
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C_parapsilosis_CDC317_current_chromosomes.fasta.gz 2024-10-20 07:02 3.8M
C_parapsilosis_CDC317_current_not_feature.fasta.gz 2024-10-20 07:02 1.4M
C_parapsilosis_CDC317_current_orf_coding.fasta.gz 2024-10-20 07:02 3.2M
C_parapsilosis_CDC317_current_orf_genomic.fasta.gz 2024-10-20 07:02 3.2M
C_parapsilosis_CDC317_current_orf_genomic_1000.fasta.gz 2024-10-20 07:02 6.9M
C_parapsilosis_CDC317_current_orf_plus_intergenic.fasta.gz 2024-10-20 07:02 5.8M
C_parapsilosis_CDC317_current_orf_trans_all.fasta.gz 2024-10-20 07:02 2.2M
C_parapsilosis_CDC317_current_other_features_genomic.fasta.gz 2024-10-20 07:02 9.7K
C_parapsilosis_CDC317_current_other_features_genomic_1000.fasta.gz 2024-10-20 07:02 86K
C_parapsilosis_CDC317_current_other_features_no_introns.fasta.gz 2024-10-20 07:02 9.3K
C_parapsilosis_CDC317_current_other_features_plus_intergenic.fasta.gz 2024-10-20 07:02 67K
C_parapsilosis_CDC317_version_s01-m06-r10_chromosomes.fasta.gz 2024-10-20 07:02 3.8M
C_parapsilosis_CDC317_version_s01-m06-r10_not_feature.fasta.gz 2024-10-20 07:02 1.4M
C_parapsilosis_CDC317_version_s01-m06-r10_orf_coding.fasta.gz 2024-10-20 07:02 3.2M
C_parapsilosis_CDC317_version_s01-m06-r10_orf_genomic.fasta.gz 2024-10-20 07:02 3.2M
C_parapsilosis_CDC317_version_s01-m06-r10_orf_genomic_1000.fasta.gz 2024-10-20 07:02 6.9M
C_parapsilosis_CDC317_version_s01-m06-r10_orf_plus_intergenic.fasta.gz 2024-10-20 07:02 5.8M
C_parapsilosis_CDC317_version_s01-m06-r10_orf_trans_all.fasta.gz 2024-10-20 07:02 2.2M
C_parapsilosis_CDC317_version_s01-m06-r10_other_features_genomic.fasta.gz 2024-10-20 07:02 9.7K
C_parapsilosis_CDC317_version_s01-m06-r10_other_features_genomic_1000.fasta.gz 2024-10-20 07:02 86K
C_parapsilosis_CDC317_version_s01-m06-r10_other_features_no_introns.fasta.gz 2024-10-20 07:02 9.3K
C_parapsilosis_CDC317_version_s01-m06-r10_other_features_plus_intergenic.fasta.gz 2024-10-20 07:02 67K
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EMBL_format/ 2024-11-18 02:41 -
This directory contains the current version of Candida parapsilosis CDC 317
genomic sequences.
C. parapsilosis CDC 317 was sequenced by the Wellcome Trust Sanger Institute (Butler et al. 2009,
Nature 459:657-662). Sequence and annotation obtained by CGD from The Broad Institute.
The notation "version_sXX-mYY-rZZ" in the filenames indicates the genome version
to which data in the file corresponds. Detailed explanation about the genome
version notation can be found at: http://www.candidagenome.org/help/SequenceHelp.shtml#versions
Information pertaining to each version update for C. parapsilosis CDC 317 can be found at:
http://www.candidagenome.org/cgi-bin/genomeVersionHistory.pl?seq_source=C.%20parapsilosis%20CDC317
Sequence files with "current" in their names are provided as stable filenames for
automated downloads. They are identical to (technically, symbolic links to) the
corresponding versioned sequence files.
These files are updated weekly:
* Chromosomal/contig sequence:
C_parapsilosis_CDC317_version_sXX-mYY-rZZ_chromosomes.fasta.gz
* Sequence with no introns for all ORFs:
C_parapsilosis_CDC317_version_sXX-mYY-rZZ_orf_coding.fasta.gz
* Sequence with introns for all ORFs:
C_parapsilosis_CDC317_version_sXX-mYY-rZZ_orf_genomic.fasta.gz
* Sequence with introns for all ORFs, plus flanking 1000 bp upstream and downstream:
C_parapsilosis_CDC317_version_sXX-mYY-rZZ_orf_genomic_1000.fasta.gz
* Sequences with introns for all ORFs, plus upstream and downstream intergenic sequence:
C_parapsilosis_CDC317_version_sXX-mYY-rZZ_orf_plus_intergenic.fasta.gz
* Translation of all ORFs:
C_parapsilosis_CDC317_version_sXX-mYY-rZZ_orf_trans_all.fasta.gz
* Sequence of non-ORF features (tRNA, rRNA, repeat regions, etc.) with any introns removed:
C_parapsilosis_CDC317_version_sXX-mYY-rZZ_other_features_no_introns.fasta.gz
* Sequence of non-ORF features including introns:
C_parapsilosis_CDC317_version_sXX-mYY-rZZ_other_features_genomic.fasta.gz
* Sequence of non-ORF features including introns and flanking 1000 bp upstream and downstream:
C_parapsilosis_CDC317_version_sXX-mYY-rZZ_other_features_genomic_1000.fasta.gz
* Sequence of non-ORF features including introns and upstream and downstream intergenic sequence:
C_parapsilosis_CDC317_version_sXX-mYY-rZZ_other_features_plus_intergenic.fasta.gz
* Sequence between annotated chromosomal features:
C_parapsilosis_CDC317_version_sXX-mYY-rZZ_not_features.fasta.gz
Note: this file contains genomic DNA sequences between (and excluding) the
following feature types:
Protein Coding Sequence
tRNA
rRNA
repeat regions
#################################################################################
The files in this directory are in FASTA format.
All files are gzip compressed. There are several freely available
software options for decompressing gzipped files. The software
and other useful information is available on these web sites:
- WinZip (http://www.winzip.com/)
- Stuffit (http://www.stuffit.com/)
- Gzip (http://www.gzip.org/
and the gzip user's manual:
http://www.math.utah.edu/docs/info/gzip_toc.html
Additional sequence documentation is found on the CGD web site at:
http://www.candidagenome.org/help/SequenceHelp.shtml
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