UniqueID (Johnson lab)	orf6 #	orf19 #	Name (Candida Annotation Working Group)	Annotation (Candida Annotation Working Group)	Gene class(es)	nrg1/WT #1	nrg1/WT #2	nrg1/WT #3	nrg1/WT #4	nrg1/WT #5	nrg1/WT #6
F11C12	3443	1166		conserved hypothetical protein	ER/Golgi/secretion	0.46	0.48	0.51	0.71	0.61	0.45
M15H9	5154	220	PIR1	cell wall structural constituent with tandem repeats	Cell wall components	0.25	0.51	0.19	0.46	0.15	0.1
F55A1	4202	2350		"highly conserved hypothetical protein, MFS family transporter"	Unknown process and function	0.4		0.32		0.38	
F63D1	6587	2765		hypothetical protein	Cell wall components	0.23	0.72	0.25	0.27	0.46	0.19
F59H3	3268	2862	RIB1	"GTP cyclohydrolase II, first step in riboflavin biosynthesis"	General metabolism	0.67	0.56	0.43			
J16C2	7803	3066	ACF3	"endo-1,3-beta-glucanase"	Secreted/degradative enzymes | Cell wall components | Sugar/polysacchride metabolism	0.23	0.53	0.25	0.18	0.29	0.25
J31H7	1590	3071	MIH1	protein tyrosine phosphatase	Cell cycle | Signaling/kinases/phosphatases	0.55	0.4	0.53	0.47	0.53	
F9B7	4481	3184	SFT2b	similar to syntaxin and involved in ER to Golgi transport	ER/Golgi/secretion	0.32		0.39	0.65		0.46
F53E9	3288	3618	YWP1	putative cell wall protein	Cell wall components	0.03	0.02	0.04	0.07	0.11	0.09
F12B8	1866	3803	MNN22	"Golgi alpha-1,2- mannosyltransferase"	ER/Golgi/secretion | Sugar/polysacchride metabolism | General metabolism	0.61	0.44	0.33	0.29	0.5	0.4
J42E8	550	3869		hypothetical protein		0.33	0.35	0.2	0.14	0.39	0.6
J17C10	5845	3874		hypothetical protein		0.46	0.44	0.63	0.46	0.47	0.59
F12G12	2346	3893	SCW11	Soluble Cell Wall protein	Cell wall components | Sugar/polysacchride metabolism	0.08	0.35	0.07	0.09	0.1	0.13
F21C3	5137	3911	SAH1	S-adenosyl-L-homocysteine hydrolase	Amino acid biosynthesis/metabolism/transport | General metabolism	0.45	0.45	0.36	0.37	0.43	0.46
F36B10	2095	412	SSH1	involved in co-translational pathway of protein transport	ER/Golgi/secretion | General metabolism	0.38	0.58	0.45	0.61	0.38	0.53
F53E5	2516	4127		SH3 domain protein with a putative role in the regulation of the actin cytoskeleton	Cell motility/budding/cell division | ER/Golgi/secretion	0.41	0.47	0.38	0.67	0.55	0.53
M15D8	7251	4438	RME1	zinc-finger transcription factor		0.23		0.15	0.42	0.21	0.22
F50A6	3754	4907		conserved hypothetical protein	Unknown process and function	0.21	0.54	0.15	0.44	0.44	0.15
F14A1	3757	4910		hypothetical protein	Cell wall components	0.05	0.14	0.05	0.05	0.04	0.03
J1F3	2433	4950	AKR1	ankyrin repeat-containing protein	ER/Golgi/secretion | Signaling/kinases/phosphatases | General metabolism	0.71	0.67	0.65	0.57	0.59	0.68
J10F1	7977	5032	SIM1	protein invovled in control of DNA replication	Cell wall components | Mitochondrial	0.35	0.62	0.43	0.47	0.34	0.52
F59A2	6305	5071	NRP1	"RNA-binding, Ran zinc finger protein"	Unknown process and function	0.54	0.45	0.5	0.55	0.63	0.45
J17E10	6972	5164	ECM39	"alpha-1,6- mannosyltransferase"	ER/Golgi/secretion | Sugar/polysacchride metabolism | General metabolism	0.57	0.49	0.6	0.65	0.53	0.59
F44B9	7675	5267		conserved hypothetical protein		0.08	0.47	0.15	0.12	0.11	0.06
J9G7	5127	6229	CTA1	"catalase A, peroxisomal"	Oxidoreductases | General metabolism	0.5	0.79		0.53	0.5	0.5
F62A8	7558	6570	NUP3	purine nucleoside permease		0.33	0.39	0.23	0.24	0.24	
F66A6	6542	6645	HMO1	high mobility group-like protein	Transcription factors/chromatin/DNA-binding | Cell cycle	0.45	0.35		0.3	0.36	0.38
Op1B11	8814	6817	FCR1	zinc finger transcription factor involved in pleiotropic drug resistance				0.2	0.1	0.19	
F59E2	8807	6824		conserved hypothetical protein containing Helix-loop-helix DNA-binding domain		0.72	0.5	0.38			
F44F5	7138	6874		myb-like transcription factor	Transcription factors/chromatin/DNA-binding | Amino acid biosynthesis/metabolism/transport | General metabolism	0.38	0.54	0.44	0.5	0.75	0.39
F14C9	8118	7218	PRY2	homology to plant PR-1 class of proteins	Secreted/degradative enzymes | Vacuolar	0.13	0.17	0.06	0.04	0.03	
J28H1	8606	7446	OPI3	methylene-fatty-acyl-phospholipid synthase	Lipid metabolism | ER/Golgi/secretion | General metabolism	0.21	0.41	0.35	0.47	0.49	
F54G5	4136	747	NBP35	nuclear ATPase	Miscellaneous	0.54	0.55	0.46		0.58	0.57
F69C3	8902	7554	SGE1	suppressor of gal11 null	Miscellaneous 	0.48	0.45	0.48		0.36	0.36
F69E4	8934	7586	CHT3	chitinase 3 precursor	ER/Golgi/secretion | Secreted/degradative enzymes | Cell wall components | Sugar/polysacchride metabolism	0.08	0.21	0.08	0.03	0.09	0.09
M15G4	6705	814	SSY1.5	transcriptional regulator of multiple amino acid permeases	Miscellaneous 	0.29	0.63	0.2			
J9E10	5814	984	PHO82	vacuolar alkaline phosphatase	Transcription factors/chromatin/DNA-binding | DNA metabolism/repair | Vacuolar | General metabolism	0.59	0.58	0.71	0.67	0.63	0.59


SAM False Discovery Rate (FDR) = 0.52%