UniqueID (Johnson lab)	orf6 #	orf19 #	Name (Candida Annotation Working Group)	Annotation (Candida Annotation Working Group)	Gene class(es)	tup1/WT #1	tup1/WT #2	tup1/WT #3	tup1/WT #4	tup1/WT #5	tup1/WT #6
F66G5	2846	1193	GNP2	high-affinity glutamine permease	Amino acid biosynthesis/metabolism/transport	0.49	0.25	0.38		0.25	0.20
F51F4	332	1357	FCY2	purine-cytosine permease	Miscellaneous	0.34		0.41	0.52	0.41	0.42
J33D2	7098	1474	SLA1	SH3 domain protein involved in cortical actin cytoskeleton	Cell motility/budding/cell division | ER/Golgi/secretion	0.43			0.26	0.39	0.39
F30E1	1885	1573	ATC9	cation translocating P-type ATPase	Unknown process and function	0.42		0.46	0.24	0.4	
J12D9	1090	1614	MEP3	low affinity high capacity ammonium permease	Miscellaneous 	0.52		0.26	0.13	0.21	0.12
F49C2	2231	1799	GAP6	general amino acid permease	Amino acid biosynthesis/metabolism/transport	0.56	0.18	0.39	0.36	0.37	0.35
J33D6	5615	1847	ARO10	putative decarboxylase	Amino acid biosynthesis/metabolism/transport | General metabolism	0.12	0.10	0.5	0.08	0.14	0.36
F61G2	6363	1996	CHA2	catabolic serine/threonine dehydratase	Amino acid biosynthesis/metabolism/transport | Mitochondrial | General metabolism	0.26	0.39	0.46	0.18	0.31	0.35
J3A3	7486	2069	SMF3	vacuolar metal transporter	Iron metabolism | Vacuolar	0.51		0.37	0.26	0.42	0.16
M4D5	5571	2337	ALP1	high-affinity permease for basic amino acids	Amino acid biosynthesis/metabolism/transport	0.1	0.32	0.14	0.06	0.22	0.15
F63C5	3372	2525	LYS12	homo- isocitrate dehydrogenase	Amino acid biosynthesis/metabolism/transport | Oxidoreductases | Mitochondrial | General metabolism	0.5	0.54	0.62	0.44	0.38	0.52
J31H3	3590	2758		"hypothetical protein, similar to RBT1"	Cell wall components	0.2	0.28	0.57	0.27	0.38	0.42
F56G5	713	3195	GAP3	general amino acid permease	Amino acid biosynthesis/metabolism/transport	0.29	0.42	0.43	0.19	0.36	0.17
F53E9	3288	3618	YWP1	putative cell wall protein	Cell wall components	0.1	0.05	0.13	0.10	0.18	0.13
F21C3	5137	3911	SAH1	S-adenosyl-L-homocysteine hydrolase	Amino acid biosynthesis/metabolism/transport | General metabolism	0.32	0.29	0.39	0.45	0.31	0.66
J17D7	804	4118	NNT1	concentrative Na+-nucleoside cotransporter		0.24	0.55	0.37	0.31	0.44	0.36
J31G8	4607	4304	GAP1	general amino acid permease	Amino acid biosynthesis/metabolism/transport	0.48	0.28	0.43	0.46	0.31	0.19
F24F12	3152	4716	GDH3	NADP-glutamate dehydrogenase	Amino acid biosynthesis/metabolism/transport | Oxidoreductases | General metabolism	0.2	0.20	0.16	0.04	0.18	0.09
F50A6	3754	4907		conserved hypothetical protein	Unknown process and function	0.18	0.34	0.38	0.53	0.16	0.16
F14A1	3757	4910		hypothetical protein	Cell wall components	0.26	0.28	0.37	0.28	0.21	0.32
F10D3	6958	5178	ERG5	cytochrome P450	Lipid metabolism | ER/Golgi/secretion | General metabolism	0.37		0.36	0.29	0.47	
F1B3	3409	5193		benzil reductase	Unknown process and function	0.01	0.01	0.04	0.01	0.01	0.01
F44B9	7675	5267		conserved hypothetical protein		0.19	0.22	0.77	0.19	0.25	0.23
F31H9	4661	5496		transmembrane amino acid transporter	Amino acid biosynthesis/metabolism/transport | Vacuolar	0.34		0.45	0.31	0.39	
F14C3	1361	5572	VAN2	mannosyltransferase: vanadate resistance protein		0.54		0.56	0.41	0.49	0.47
J37A9	6542	6645	HMO1	high mobility group-like protein	Transcription factors/chromatin/DNA-binding | Cell cycle	0.36	0.63	0.4	0.52	0.36	0.40
J46C2	6764	6656	DUR8	urea transport protein		0.31	0.38	0.26	0.35	0.37	0.33
F44E5	7323	6937	PTR2	peptide transporter	Miscellaneous 	0.58	0.09	0.23	0.21	0.13	0.16
F35C1	8366	7285		conserved hypothetical protein	Transcription factors/chromatin/DNA-binding | RNA metabolism | General metabolism	0.42		0.61	0.51	0.47	0.52
M4G10	8420	7339	BGL1	beta-glucosidase 2 precursor		0.33		0.39	0.62	0.42	0.40
J44D5	8590	7433	NUP116	nuclear pore protein | nucleoporin	RNA metabolism | General metabolism	0.35		0.56		0.42	0.33
J28H1	8606	7446	OPI3	methylene-fatty-acyl-phospholipid synthase	Lipid metabolism | ER/Golgi/secretion | General metabolism	0.23		0.42	0.37	0.4	0.29
J17G2	8902	7554	SGE1	suppressor of gal11 null	Miscellaneous	0.21		0.31	0.22	0.27	0.20
J12D2	8934	7586	CHT3	chitinase 3 precursor	ER/Golgi/secretion | Secreted/degradative enzymes | Cell wall components | Sugar/polysacchride metabolism	0.08	0.31	0.18	0.09	0.11	0.24
F48H5	9003	7655	RPO21	"DNA-directed RNA polymerase II, 215 KD subunit"	Transcription factors/chromatin/DNA-binding | General metabolism	0.21		0.33	0.38	0.41	
F52E3	2989	789	PYC2	pyruvate carboxylase	Sugar/polysacchride metabolism | General metabolism	0.23		0.16	0.18	0.57	
J36B4	no orf6	4623.3	NHP6A	non-histone protein similar to high mobility group proteins	DNA metabolism/repair | Transcription factors/chromatin/DNA-binding | General metabolism	0.22	0.17	0.36	0.26	0.43	0.29



SAM False Discovery Rate (FDR) = 0.18%