Index of /download/systematic_results/Sellam_2010

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This directory contains data files that accompany the paper by Sellam et al (2010) Experimental annotation of the
human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays.
Genome Biol. 2010 Jul 9;11(7):R71 (PMID: 20618945)

gb-2010-11-7-r71-s1.pdf 
Figure S1. GO analysis of the 28% of nuclear genes not expressed in this study.

gb-2010-11-7-r71-s2. xls 
Table S1. Genome-scale detection of unannotated transcribed segments in C. albicans
growing in different conditions.

gb-2010-11-7-r71-s3.xls 
Table S15. List of nested or overlapping genes validated in this work.

gb-2010-11-7-r71-s4.xls 
Table S2. List of detected ORFs and pseudogenes.

gb-2010-11-7-r71-s5.xls 
Table S3. List of ORFs exhibiting long 5' and 3' UTRs (>240 bp)

gb-2010-11-7-r71-s6.doc 
Table S4. Gene Ontology analysis of ORFs with long 5' and 3' UTR regions (>330 bp).

gb-2010-11-7-r71-s7.xls 
Tables S5, S6, and S7. Genome-wide detection of ncRNAs: Table S5, AS transcripts; Table
S6, housekeeping ncRNAs; and Table S7, RT-qPCR validation of randomly selected ncRNAs.

gb-2010-11-7-r71-s8.pdf 
Figure S2. Transcription and RNAP I and III occupancies within the rDNA locus.

gb-2010-11-7-r71-s9.xls 
Tables S8 and S9. Detection of RNAP III binding peaks (Table S8) and genomic organization
and coordinates of telomeric ncRNA (TelRs; Table S9).

gb-2010-11-7-r71-s10.pdf 
Figure S3. Transcription and RNAP III occupancy of ncRNAs. tRNAs (a, b), RPR1 (b) and an
unknown ncRNA (c) are represented.

gb-2010-11-7-r71-s11.xls 
Table S10. GO process annotation of differentially regulated annotated features using
the CGD GO Term Finder

gb-2010-11-7-r71-s12.xls 
Table S11. List of differentially expressed ORFs in hyphae, biofilm and caecum-grown
cells.

gb-2010-11-7-r71-s13.pdf 
Figure S4. Real-time quantitative PCR validation of candidate genes differentially
expressed in caecum-grown Candida cells. Both heme-binding (a) and carbohydrate catabolism genes (b) were
considered.

gb-2010-11-7-r71-s14.xls 
Figure S1. GO analysis of the 28% of nuclear genes not expressed in this study. Table
S12. Genome-scale detection of differentially expressed unannotated transfrags in C. albicans.