Index of /download/systematic_results/Tuch_2010

Icon  Name                          Last modified      Size  Description
[DIR] Parent Directory - [TXT] journal.pgen.1001070.s008.txt 08-Sep-2010 06:17 2.6M [TXT] journal.pgen.1001070.s009.txt 08-Sep-2010 06:17 2.6M [TXT] journal.pgen.1001070.s010.txt 08-Sep-2010 06:17 853K [TXT] journal.pgen.1001070.s011.txt 08-Sep-2010 06:17 1.0M [TXT] journal.pgen.1001070.s012.txt 08-Sep-2010 06:17 2.6M
This directory contains data files from the paper by Tuch et al. (2010) 
The transcriptomes of two heritable cell types illuminate the circuit
governing their differentiation. PLoS Genet. 2010 Aug 19;6(8). pii: e1001070
(PMID: 20808890).

The files contain (according to the authors):

journal.pgen.1001070.s008.txt
New transcript annotation

journal.pgen.1001070.s009.txt
Hand-edited version of the new transcript annotation. Same as Table S1 except
here we have manually modified the nTARs containing the short ORFs homologous
to ntar_1176. This required splitting some nTARs and creating others that were
not expressed under the conditions studied here. We also removed the UTRs of
HIS1, which has been replaced in the studied strain with its ortholog from
another species.

journal.pgen.1001070.s010.txt 
Results of the differential expression (white versus opaque) analysis.

journal.pgen.1001070.s011.txt
Results of the differential UTR length (white versus opaque) analysis.

journal.pgen.1001070.s012.txt
Final new transcript annotation. Same as Table S2 except here we have unified
the transcript naming scheme and manually modified the structure of one
complex gene on the mitochondrial genome, CaalfMp08.