Index of /download/homology/best_hits
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C_albicans_SC5314_N_crassa_best_hits.txt 2019-08-23 04:47 133K
C_parapsilosis_CDC317_N_crassa_best_hits.txt 2019-08-23 05:13 132K
C_dubliniensis_CD36_N_crassa_best_hits.txt 2019-08-23 04:55 122K
C_glabrata_CBS138_N_crassa_best_hits.txt 2019-08-23 05:03 120K
C_auris_B8441_N_crassa_best_hits.txt 2019-08-23 05:20 119K
C_parapsilosis_CDC317_A_nidulans_best_hits.txt 2019-08-23 05:10 117K
C_albicans_SC5314_A_nidulans_best_hits.txt 2019-08-23 04:45 117K
C_dubliniensis_CD36_A_nidulans_best_hits.txt 2019-08-23 04:53 109K
C_glabrata_CBS138_A_nidulans_best_hits.txt 2019-08-23 05:01 107K
C_auris_B8441_A_nidulans_best_hits.txt 2023-06-29 09:53 105K
C_albicans_SC5314_S_pombe_best_hits.txt 2019-08-23 04:43 89K
C_parapsilosis_CDC317_S_pombe_best_hits.txt 2019-08-23 05:08 89K
C_dubliniensis_CD36_S_pombe_best_hits.txt 2019-08-23 04:51 84K
C_auris_B8441_S_pombe_best_hits.txt 2019-08-23 05:16 76K
C_glabrata_CBS138_S_pombe_best_hits.txt 2019-08-23 04:59 75K
C_parapsilosis_CDC317_C_glabrata_CBS138_best_hits.txt 2019-08-23 05:15 74K
C_albicans_SC5314_C_glabrata_CBS138_best_hits.txt 2019-08-23 04:49 73K
C_glabrata_CBS138_C_auris_B8441_best_hits.txt 2019-08-23 05:04 72K
C_glabrata_CBS138_C_parapsilosis_CDC317_best_hits.txt 2019-08-23 05:06 69K
C_dubliniensis_CD36_C_glabrata_CBS138_best_hits.txt 2019-08-23 04:57 68K
C_auris_B8441_C_glabrata_CBS138_best_hits.txt 2019-08-23 05:22 64K
C_glabrata_CBS138_C_dubliniensis_CD36_best_hits.txt 2019-08-23 05:05 63K
C_glabrata_CBS138_C_albicans_SC5314_best_hits.txt 2019-08-23 05:04 57K
C_parapsilosis_CDC317_C_auris_B8441_best_hits.txt 2019-08-23 05:13 44K
C_albicans_SC5314_C_auris_B8441_best_hits.txt 2019-08-23 04:48 39K
C_parapsilosis_CDC317_S_cerevisiae_best_hits.txt 2019-08-23 05:07 39K
C_albicans_SC5314_S_cerevisiae_best_hits.txt 2019-08-23 04:41 36K
C_dubliniensis_CD36_C_auris_B8441_best_hits.txt 2019-08-23 04:56 36K
C_dubliniensis_CD36_S_cerevisiae_best_hits.txt 2019-08-23 04:50 34K
C_auris_B8441_S_cerevisiae_best_hits.txt 2019-08-23 05:15 32K
C_glabrata_CBS138_S_cerevisiae_best_hits.txt 2019-08-23 04:58 32K
C_auris_B8441_C_parapsilosis_CDC317_best_hits.txt 2019-08-23 05:22 27K
C_albicans_SC5314_C_parapsilosis_CDC317_best_hits.txt 2019-08-23 04:49 26K
C_parapsilosis_CDC317_C_dubliniensis_CD36_best_hits.txt 2019-08-23 05:14 25K
C_auris_B8441_C_dubliniensis_CD36_best_hits.txt 2019-08-23 05:21 24K
C_parapsilosis_CDC317_C_albicans_SC5314_best_hits.txt 2019-08-23 05:13 23K
C_dubliniensis_CD36_C_parapsilosis_CDC317_best_hits.txt 2019-08-23 04:57 21K
C_auris_B8441_C_albicans_SC5314_best_hits.txt 2019-08-23 05:21 21K
C_albicans_SC5314_C_dubliniensis_CD36_best_hits.txt 2019-08-23 04:48 12K
C_dubliniensis_CD36_C_albicans_SC5314_best_hits.txt 2019-08-23 04:55 9.8K
C_auris_B8441_CDC317_A_nidulans_best_hits.txt 2019-08-01 17:13 0
This directory contains data related to homology among C. albicans, C. auris,
C. dubliniensis, C. glabrata, C. parapsilosis, and between Candida species
and other organisms.
The orthology subdirectory contains data pertaining to orthology
mappings among Candida species in CGD and between Candida
species and model yeasts S. cerevisiae and S. pombe.
The best_hits subdirectory contains BLASTP-based mappings, which are
made with lower-stringency requirements compared to the ortholog
mappings. If a protein lacks an ortholog in one of the other species,
we search to see if there is a best-hit.
The format of the pairwise ortholog and Best Hit files (updated
September 2012) contains three tab-delimited columns for each
organism.
For each organism, the columns display:
- the systematic name of the gene
- the standard/genetic name of the gene (if one exists)
- the database identifier for the gene
The specific procedures used for generation of these mappings is described here:
http://www.candidagenome.org/cgi-bin/reference/reference.pl?dbid=CAL0142012
These best hits data are available in the same format as the files containing
the ortholog data. The ortholog files are available at
http://www.candidagenome.org/download/homology/orthologs/