How to cite CGD

 
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The basic format for citing electronic resources is:

Author's Last Name, First Name. "Title of Work." Title of Complete Work. [protocol and address] [path](date of message or visit).

The following are examples that can be used to cite CGD.

  • To cite CGD files obtained via the World Wide Web:
    Skrzypek MS, Binkley J, Binkley G, Miyasato SR, Simison M, and Sherlock G.
    "Candida Genome Database" http://www.candidagenome.org/
    (date information was obtained).
  • To cite information obtained from CGD:
    Skrzypek MS, Binkley J, Binkley G, Miyasato SR, Simison M, Sherlock G (2017). The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data. Nucleic Acids Res 45 (D1); D592-D596.

    When citing information obtained in a search of CGD it should be remembered that while CGD strives to contain the most current and accurate data, CGD should not be used in citations where other primary sources of information are available.

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    circle CGD Reference List

    Skrzypek MS, Binkley J, Binkley G, Miyasato SR, Simison M, Sherlock G The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data. Nucleic acids Res. 2016; (Epub. ahead of print) doi: 10.1093/nar/gkw924. Available here.

    Skrzypek MS, Binkley J, Sherlock G. How to Use the Candida Genome Database. Methods Mol Biol. 2016; 1356:3-15. doi: 10.1007/978-1-4939-3052-4_1. Available here.

    Binkley J, Arnaud MB, Inglis DO, Skrzypek MS, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G. The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny. Nucleic Acids Res. 2014 Jan; 42(Database issue):D711-6. doi: 10.1093/nar/gkt1046. Available here.

    Inglis DO, Skrzypek MS, Arnaud MB, Binkley J, Shah P, Wymore F, Sherlock G.
    Improved Gene Ontology annotation for biofilm formation, filamentous growth and phenotypic switching in Candida albicans.
    Eukaryot Cell. 2013 Jan;12(1):101-8. Available here.

    Inglis DO, Arnaud MB, Binkley J, Shah P, Skrzypek MS, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G.
    The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata.
    Nucleic Acids Res. 2012 Jan;40(Database issue):D667-74. Available here.

    Skrzypek MS, Arnaud MB, Costanzo MC, Inglis DO, Shah P, Binkley G, Miyasato SR, Sherlock G.
    New tools at the Candida Genome Database: biochemical pathways and full-text literature search.
    Nucleic Acids Res. 2010 Jan;38(Database issue):D428-32; doi: 10.1093/nar/gkp836
    Available here.

    Arnaud MB, Costanzo MC, Shah P, Skrzypek MS, Sherlock G.
    Gene Ontology and the annotation of pathogen genomes: the case of Candida albicans.
    Trends Microbiol. 2009 Jul 6;17(7):295-303.
    Available here.

    Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, Costanzo MC, Fitzpatrick DA, de Groot PW, Harris D, Hoyer LL, Hube B, Klis FM, Kodira C, Lennard N, Logue ME, Martin R, Neiman AM, Nikolaou E, Quail MA, Quinn J, Santos MC, Schmitzberger FF, Sherlock G, Shah P, Silverstein KA, Skrzypek MS, Soll D, Staggs R, Stansfield I, Stumpf MP, Sudbery PE, Srikantha T, Zeng Q, Berman J, Berriman M, Heitman J, Gow NA, Lorenz MC, Birren BW, Kellis M, Cuomo CA.
    Evolution of pathogenicity and sexual reproduction in eight Candida genomes.
    Nature 2009 Jun 4;459(7247):657-62
    Available here.

    Arnaud MB, Costanzo MC, Skrzypek MS, Shah P, Binkley G, Lane C, Miyasato SR, Sherlock G.
    Sequence resources at the Candida Genome Database.
    Nucleic Acids Res. 2007 Jan; 35(Database issue):D452-6
    Available here.

    Costanzo MC, Arnaud MB, Skrzypek MS, Binkley G, Lane C, Miyasato SR, Sherlock G.
    The Candida Genome Database: Facilitating research on Candida albicans molecular biology.
    FEMS Yeast Res. 2006 Aug;6(5):671-84.
    Available on request.

    Arnaud MB, Costanzo MC, Skrzypek MS, Binkley G, Lane C, Miyasato SR, Sherlock G.
    The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information.
    Nucleic Acids Res. 2005 Jan 1;33(Database issue):D358-63.
    Available here.

     
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