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Search Options
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View all,
Advanced Search,
Get Sequence,
BLAST,
GBrowse (A21),
Pathways,
PatMatch,
Primers,
Full-text
Search (Textpresso),
Search CGD web pages,
Global Gene Hunter,
Search Literature,
and more.
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Help Resources
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View all.
Getting Started,
Sitemap, FAQ,
and more.
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GO Resources
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View all,
SGD GO Tutorial,
What is GO?,
GO Slim Mapper,
GO Term Finder,
and more.
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Community Resources
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Search CGD colleagues,
Find Candida labs,
Meetings & Courses,
Community News,
Nomenclature Guide,
Highlighted Topics,
Laboratory Strains and Lineage,
Job Opportunities.
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Submit Data
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View all,
Gene Registry,
Colleague update,
Contact CGD,
and more.
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Download Data
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View all,
Batch Download,
GO Annotations File (README),
Chromosomal
Feature File (README),
Sequence (README),
and more.
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External Resources
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External Resources.
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About CGD
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Genome Snapshot,
Citing CGD,
Usage Statistics,
CGD Staff,
Contact CGD.
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CGD Search Options
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| All the search
options listed below search for information within the Candida Genome Database (*with
the exception of Global Gene Hunter, which searches other databases as
well) |
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 CGD Basic Searches
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| Note: All searches are case insensitive; wildcard
character (*) ok; only last names of colleagues are searched |
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| CGD Quick Search: | |
| Use a keyword to simultaneously
search by major categories of information in CGD (gene name,
locus description, GO
terms, GO IDs, phenotypes, colleagues, authors, PubMed IDs, biochemical pathway
names, S. cerevisiae orthologs
and best hits. Examples: 'ACT1', 'orf19.2203', 'orf6.1022', 'transcription', 'Smith'. The asterisk character (*) may be used as a wild card.
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| CGD Text
Search: |
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| Use a keyword to simultaneously
search all of the categories of information in CGD that are
included in the Quick Search, plus locus history notes,
paper abstracts, and gene name descriptions.
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| CGD Advanced Searches |
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Advanced
Search
Find a chromosomal feature (e.g., gene, ORF,
centromere) based on selected criteria (e.g., chromosome
number, GO-Slim terms, etc.) |
Full-text
Literature Search
Customizable keyword searching of the
full-text of over 16,500 Candida journal articles with
Textpresso,
a tool developed at Wormbase |
Batch Download
Simultaneous retrieval of multiple types of data for a list of gene or feature names
Expanded Phenotype Search
Search the text of all phenotype
information to find phenotypes of interest and view the genes
associated with them, or browse the entire list of
phenotype terms |
GO Slim Mapper
This tool determines to
which GO-slim terms a set of Candida albicans genes is annotated |
GO Term Finder
This tool determines the signficant GO terms that a set of Candida albicans genes shares in common
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Specialized
Pathway Searches
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Pathway Query Page
Search biochemical pathway information in
CGD, using the query functionality integral to the
Pathway Tools software.
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Specialized Gene
and Sequence Searches
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Gene/Sequence Resources (Get Sequence)
Retrieve, display, and analyze a gene or
sequence in many ways, such as protein translation and
restriction mapping. (This tool provides the functions of the
old Get Sequence tool, and more)
BLAST
Compare any query sequence against various
Candida albicans datasets
GBrowse Genome Browser
View and navigate genomic sequence of Assembly
21 chromosomes (Assembly
19 contigs are also available for browsing)
Chromosome History Search
View the complete sequence and annotation
history of each Assembly 21 chromosome
Pattern Matching
Locate DNA or protein sequence patterns
Design Primers
Design sequencing and PCR primers
Restriction Analysis
Display the restriction map for a sequence
Global
Gene Hunter * Searches other
databases in addition to CGD
Find everything about a Candida albicans gene from multiple databases
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| Search S. cerevisiae Orthologs
and Best Hits: |
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Search orthologs or best
hits to S. cerevisiae
genes by SGD gene name. Case insensitive and wildcard character (*) searches
are allowed.
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| Search CGD Web Pages |
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| Search Candida Literature |
Search Literature in CGD
View CGD's annotated literature guide for any gene
List of genome-wide analysis papers
Link to a list of genome-wide analysis
papers (e.g., microarray analysis publications) stored in
CGD
Search Colleague Information
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Search CGD Colleagues
Search contact information submitted to
CGD by Candida researchers
Candida Laboratories
Links to PIs of laboratories that study Candida |
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Return to CGD