Candida albicans SC5314 Genome Snapshot/Overview

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This page provides information on the status of the C. albicans SC5314 genome. Data on this page are updated once a day. All the data displayed on this page are available in one or more files (Chromosomal Feature File; GO Annotations File; Candida Go Slim Annotations File) on the CGD Download Data page. The Advanced Search tool can also be used to retrieve chromosomal features that match specific criteria.

Contents

1. Graphical View of Protein Coding Genes
2. Genome Inventory
3. Summary of Chromosome Sequence and Annotation Updates
4. Summary of GO annotations
5. Distribution of Gene Products by Process, Function, and Component

Graphical View of Protein Coding Genes (as of May 28, 2022)

4292 ORFs, 69.03% 1774 ORFs, 28.53% 152 ORFs, 2.44%

Genome Inventory (as of May 28, 2022)

This table reports the number and types of features annotated in CGD, per chromosome (excluding unmapped features). To get a list of all features of a certain type (e.g., Verified ORF, tRNA, etc.), select that feature type. To access more information on the individual chromosome (e.g., sequence, a listing of all features on that chromosome, etc.), select each chromosome name. (Feature types that are not yet annotated in CGD are not listed in the table below.)

Feature TypeTotalHaploid TotalChromosome
chr1Achr1Bchr2Achr2Bchr3Achr3Bchr4Achr4Bchr5Achr5Bchr6Achr6Bchr7Achr7BchrRAchrRBNuclear genomeMitochondrial genome
Total ORFs12405619813831383101710177607606746745235224394394074079909901238520
Verified ORFs3538177440840829429422322318918915815812112110610627027035380
Uncharacterized ORFs85644272949949705705517517467467349349305305288288692692854420
Dubious ORFs303152262618182020181816151313131328283030
tRNA2821262323242421211717664411303025230
Long_terminal_repeat257129252520201010141410101010111129282570
snoRNA150752222131333111155443314141500
Repeat_region8442555511665555101055840
Retrotransposon24122222111100112233240
Centromere1681111111111111111160
Pseudogenes1681111000011110044160
Blocked_reading_frame1681133001100111111160
snRNA1050011111100000022100
rRNA104000000000000004482
ncRNA1050011000000000044100
Total1328066201463146310881088798798726726551550466466436436108710861322852
Chromosome length (bp)28,605,41815,473,7503,188,3413,188,3962,231,8832,231,7501,799,2981,799,2711,603,2591,603,3111,190,8691,190,9911,033,2921,033,212949,580949,6112,286,2372,285,69728,564,99840,420


Summary of Chromosome Sequence and Annotation updates

As new data become available, CGD curators update the systematic sequence and its annotation. This table summarizes the sequence and/or annotation updates made for each chromosome.

Select the chromosome number to retrieve the corresponding Chromosome History page, which provides details on all the updates for that chromosome. Current and past versions of the sequence and annotation are also available on the CGD
Download Data page. Detailed information about the sequence data in CGD, including the sources from which sequence-based information are dervived, and a history of the reference strain genome assemblies, is found on the Sequence Documentation page.

If you are aware of additional sequence or annotation changes that should be made to the reference sequence, please send a message to CGD curators. At this time, CGD does not record sequence variation between SC5314 and other strains of C. albicans SC5314.