Candida glabrata CBS138 Genome Snapshot/Overview

This page provides information on the status of the C. glabrata CBS138 genome. Data on this page are updated once a day. All the data displayed on this page are available in one or more files (Chromosomal Feature File; GO Annotations File; Candida Go Slim Annotations File) on the CGD Download Data page. The Advanced Search tool can also be used to retrieve chromosomal features that match specific criteria.

1. Graphical View of Protein Coding Genes

2. Genome Inventory

3. Summary of Chromosome Sequence and Annotation Updates

4. Summary of GO annotations

5. Distribution of Gene Products by Process, Function, and Component

Graphical View of Protein Coding Genes (as of Nov 21, 2024)

4697 ORFs, 89.09%

575 ORFs, 10.91%

Genome Inventory (as of Nov 21, 2024)

This table reports the number and types of features annotated in CGD, per chromosome (excluding unmapped features). To get a list of all features of a certain type (e.g., Verified ORF, tRNA, etc.), select that feature type. To access more information on the individual chromosome (e.g., sequence, a listing of all features on that chromosome, etc.), select each chromosome name. (Feature types that are not yet annotated in CGD are not listed in the table below.)

Feature Type	Total	Chromosome
Feature Type	Total	ChrA	ChrB	ChrC	ChrD	ChrE	ChrF	ChrG	ChrH	ChrI	ChrJ	ChrK	ChrL	ChrM	Nuclear genome	Mitochondrial genome
Total ORFs	5272	203	217	238	288	280	385	439	465	464	517	563	579	623	5261	11
Verified ORFs	575	36	22	35	30	47	43	48	44	42	43	62	47	75	574	1
Uncharacterized ORFs	4697	167	195	203	258	233	342	391	421	422	474	501	532	548	4687	10
tRNA	230	9	9	7	18	9	15	18	14	26	17	22	25	18	207	23
ncRNA	70	2	2	2	2	1	3	6	4	4	4	14	9	16	69	1
rRNA	34	0	0	0	0	0	0	0	0	0	0	0	16	16	32	2
Centromere	11	1	1	1	1	1	1	1	0	0	1	1	1	1	11	0
Pseudogenes	8	0	1	1	0	0	0	0	0	1	2	0	2	1	8	0
Long_terminal_repeat	4	0	0	0	1	0	0	3	0	0	0	0	0	0	4	0
Repeat_region	2	0	0	0	1	0	0	1	0	0	0	0	0	0	2	0
Total	5631	215	230	249	311	291	404	468	483	495	541	600	632	675	5594	37
Chromosome length (bp)	12,746,276	527,800	512,655	594,526	667,900	707,423	957,515	1,010,292	1,057,388	1,142,525	1,247,563	1,307,090	1,528,264	1,465,272	12,726,213	20,063

Summary of Chromosome Sequence and Annotation updates

As new data become available, CGD curators update the systematic sequence and its annotation. This table summarizes the sequence and/or annotation updates made for each chromosome.

Select the chromosome number to retrieve the corresponding Chromosome History page, which provides details on all the updates for that chromosome. Current and past versions of the sequence and annotation are also available on the CGD Download Data page. Detailed information about the sequence data in CGD, including the sources from which sequence-based information are dervived, and a history of the reference strain genome assemblies, is found on the Sequence Documentation page.

If you are aware of additional sequence or annotation changes that should be made to the reference sequence, please send a message to CGD curators. At this time, CGD does not record sequence variation between SC5314 and other strains of C. glabrata CBS138.