Candida glabrata CBS138 Genome Snapshot/Overview

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This page provides information on the status of the C. glabrata CBS138 genome. Data on this page are updated once a day. All the data displayed on this page are available in one or more files (Chromosomal Feature File; GO Annotations File; Candida Go Slim Annotations File) on the CGD Download Data page. The Advanced Search tool can also be used to retrieve chromosomal features that match specific criteria.

Contents

1. Graphical View of Protein Coding Genes
2. Genome Inventory
3. Summary of Chromosome Sequence and Annotation Updates
4. Summary of GO annotations
5. Distribution of Gene Products by Process, Function, and Component

Graphical View of Protein Coding Genes (as of Oct 05, 2022)

4740 ORFs, 89.93% 531 ORFs, 10.07%

Genome Inventory (as of Oct 05, 2022)

This table reports the number and types of features annotated in CGD, per chromosome (excluding unmapped features). To get a list of all features of a certain type (e.g., Verified ORF, tRNA, etc.), select that feature type. To access more information on the individual chromosome (e.g., sequence, a listing of all features on that chromosome, etc.), select each chromosome name. (Feature types that are not yet annotated in CGD are not listed in the table below.)

Feature TypeTotalChromosome
ChrAChrBChrCChrDChrEChrFChrGChrHChrIChrJChrKChrLChrMNuclear genomeMitochondrial genome
Total ORFs5271202217238288280385439465464517563579623526011
Verified ORFs531282232284439464437415743695301
Uncharacterized ORFs4740174195206260236346393421427476506536554473010
tRNA230997189151814261722251820723
ncRNA68222213644414716671
rRNA34000000000001616322
Centromere111111111001111110
Pseudogenes9111000001202190
Long_terminal_repeat4000100300000040
Repeat_region2000100100000020
Total5629215230249311291404468483495541600630675559237
Chromosome length (bp)12,746,275527,799512,655594,526667,900707,423957,5151,010,2921,057,3881,142,5251,247,5631,307,0901,528,2641,465,27212,726,21220,063


Summary of Chromosome Sequence and Annotation updates

As new data become available, CGD curators update the systematic sequence and its annotation. This table summarizes the sequence and/or annotation updates made for each chromosome.

Select the chromosome number to retrieve the corresponding Chromosome History page, which provides details on all the updates for that chromosome. Current and past versions of the sequence and annotation are also available on the CGD
Download Data page. Detailed information about the sequence data in CGD, including the sources from which sequence-based information are dervived, and a history of the reference strain genome assemblies, is found on the Sequence Documentation page.

If you are aware of additional sequence or annotation changes that should be made to the reference sequence, please send a message to CGD curators. At this time, CGD does not record sequence variation between SC5314 and other strains of C. glabrata CBS138.