Genome-wide Analysis papers

Help

Click on a topic to see a list of all papers associated with that topic:

Genome-wide AnalysisProteome-wide Analysis
Comparative genomic hybridizationLarge-scale protein detection
Computational analysisLarge-scale protein interaction
Genomic co-immunoprecipitation studyLarge-scale protein localization
Genomic expression studyLarge-scale protein modification
Large-scale genetic interactionOther large-scale proteomic analysis
Large-scale phenotype analysis 
Other genomic analysis 

Result Page : 12345678910111213141516171819Next




ReferenceLiterature TopicSpeciesGenes Addressed
Alves R, et al. (2020) Transcriptional responses of Candida glabrata biofilm cells to fluconazole are modulated by the carbon source. NPJ Biofilms Microbiomes 6:4
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. glabrata |CAGL0F08239g |CAGL0J07980g |CAGL0K10274g |ERG11 |ERG9 |FTR1 |MGE1
Caplan T, et al. (2020) Overcoming Fungal Echinocandin Resistance through Inhibition of the Non-essential Stress Kinase Yck2. Cell Chem Biol
CGD Papers Entry  Pubmed Entry  
Large-scale phenotype analysisC. albicans |ALS3 |CHS1 |CHS2 |CHS3 |CHS8 |DDR48 |HRR25 |SOD5 |STP4 |URK1 |YCK2
Feng J, et al. (2020) Hof1 plays a checkpoint related role in MMS induced DNA damage response in Candida albicans. Mol Biol Cell :mbcE19060316
CGD Papers Entry  Pubmed Entry  
Large-scale phenotype analysisC. albicans |HOF1 |NOC2 |RAD23 |RAD4 |RAD53
Lagree K, et al. (2020) Roles of Candida albicans Mig1 and Mig2 in glucose repression, pathogenicity traits, and SNF1 essentiality. PLoS Genet 16(1):e1008582
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |CDC19 |CTN1 |ENO1 |FOX2 |GAL1 |GPM1 |HGT1 |HXK2 |ICL1 |MIG1 |MIG2 |MLS1 |PFK1 |PFK2 |MORE
Miramon P, et al. (2020) The paralogous transcription factors Stp1 and Stp2 of Candida albicans have distinct functions in nutrient acquisition and host interaction. Infect Immun
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |PTR3 |SFL2 |SSY1 |SSY5 |STP1 |STP2 |UME6
Sitterle E, et al. (2020) Large-scale genome mining allows identification of neutral polymorphisms and novel resistance mutations in genes involved in Candida albicans resistance to azoles and echinocandins. J Antimicrob Chemother
CGD Papers Entry  Pubmed Entry  
Other genomic analysisC. albicans |ERG11 |GSC1 |GSL1 |MRR1 |TAC1 |UPC2
Truong T, et al. (2020) Proteomics Analysis of Candida albicans dnm1 Haploid Mutant Unraveled the Association Between Mitochondrial Fission and Antifungal Susceptibility. Proteomics :e1900240
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale protein detection, Genomic expression studyC. albicans |DNM1
Verma R, et al. (2020) Genome-wide screening and in silico gene knockout to predict potential candidates for drug designing against Candida albicans. Infect Genet Evol :104196
CGD Papers Entry  Pubmed Entry  
Computational analysisC. albicans |ERG5 |FAS2 |FOL1
Xu H, et al. (2020) RNA sequencing reveals an additional Crz1-binding motif in promoters of its target genes in the human fungal pathogen Candida albicans. Cell Commun Signal 18(1):1
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |CRZ1
Yang D, et al. (2020) Candida albicans Ubiquitin and Heat Shock Factor-Type Transcriptional Factors Are Involved in 2-Dodecenoic Acid-Mediated Inhibition of Hyphal Growth. Microorganisms 8(1)
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |SFL1 |SFL2 |UBI4
Barber AE, et al. (2019) Comparative Genomics of Serial Candida glabrata Isolates and the Rapid Acquisition of Echinocandin Resistance during Therapy. Antimicrob Agents Chemother 63(2)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Other genomic analysisC. glabrata |FKS2 |FPR1 |MDE1
Bravo Ruiz G, et al. (2019) Rapid and extensive karyotype diversification in haploid clinical Candida auris isolates. Curr Genet 65(5):1217-1228
CGD Papers Entry  Pubmed Entry  
Other genomic analysis
Carrete L, et al. (2019) Genome Comparisons of Candida glabrata Serial Clinical Isolates Reveal Patterns of Genetic Variation in Infecting Clonal Populations. Front Microbiol 10:112
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Other genomic analysisC. glabrata |CAGL0B00242g |CAGL0F09273g |CAGL0J01774g |CAGL0J02530g |CAGL0L00227g |CAGL0M08756g |CDR1 |ERG11 |ERG3 |ERG9 |FEN1 |FKS1 |FKS2 |FLR1 |MORE
C. albicans |CDR1 |CDR2 |ERG11 |ERG3 |ERG9 |FEN1 |GSL2 |QDR2 |SNQ2
Castanheira M, et al. (2019) Analysis of Global Antifungal Surveillance Results Reveals Predominance of Erg11 Y132F Alteration among Azole-Resistant Candida parapsilosis and Candida tropicalis and Country-Specific Isolate Dissemination. Int J Antimicrob Agents
CGD Papers Entry  Pubmed Entry  
Other genomic analysisC. glabrata |CDR1 |ERG11
C. albicans |CDR1 |ERG11 |MDR1
C. dubliniensis |CDR1 |Cd36_84000 |ERG11 |MDR1
C. parapsilosis |CDR1 |ERG11 |MDR1
Chinnici J, et al. (2019) Candida albicans cell wall integrity transcription factors regulate polymicrobial biofilm formation with Streptococcus gordonii. PeerJ 7:e7870
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |ACE2 |ASH1 |BAS1 |BCR1 |BRG1 |CAS5 |CPH2 |CRZ1 |CSR1 |CTA4 |CUP9 |CWT1 |CZF1 |EFG1 |MORE
Cottier F, et al. (2019) Remasking of Candida albicans beta-Glucan in Response to Environmental pH Is Regulated by Quorum Sensing. MBio 10(5)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |CHT2 |EFG1
Das S, et al. (2019) Network analysis of hyphae forming proteins in Candida albicans identifies important proteins responsible for pathovirulence in the organism. Heliyon 5(6):e01916
CGD Papers Entry  Pubmed Entry  
Computational analysisC. albicans |ACT1 |BEM1 |CDC10 |CDC11 |CDC24 |CDC28 |CDC42 |CLA4 |CLN3 |CYR1 |HGC1 |HOG1 |HSP90 |PBS2 |MORE
Duvenage L, et al. (2019) Inhibition of Classical and Alternative Modes of Respiration in Candida albicans Leads to Cell Wall Remodeling and Increased Macrophage Recognition. MBio 10(1)
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |AOX1 |AOX2 |FBP1 |GPM1 |GPM2 |ICL1 |MLS1 |PCK1 |PGI1 |PGK1 |UPC2 |YHB1
El Khoury P, et al. (2019) Phenotypic and Cell Wall Proteomic Characterization of a DDR48 mutant Candida albicans Strain. J Microbiol Biotechnol
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |ALS3 |CR_01020C_A |DDR48 |ECE1 |HSP90 |HYR4 |IPP1 |PGA4 |PMT1 |PRA1 |RIM9 |SOD4 |SOD6 |UTR2
Guo X, et al. (2019) Understand the genomic diversity and evolution of fungal pathogen Candida glabrata by genome-wide analysis of genetic variations. Methods
CGD Papers Entry  Pubmed Entry  
Computational analysisC. glabrata |CST6 |EPA10 |EPA9
Huang MY, et al. (2019) Circuit diversification in a biofilm regulatory network. PLoS Pathog 15(5):e1007787
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |BCR1 |BRG1 |EFG1 |UME6
Islam A, et al. (2019) Mms21: A Putative SUMO E3 Ligase in Candida albicans That Negatively Regulates Invasiveness and Filamentation, and Is Required for the Genotoxic and Cellular Stress Response. Genetics 211(2):579-595
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |ALS1 |ALS3 |BUB3 |DAP1 |ECE1 |EFG1 |HGC1 |HNT2 |HWP1 |MMS21 |PGA13 |PGA26 |RAD2 |SOD4 |MORE
Jakab A, et al. (2019) Physiological and Transcriptional Responses of Candida parapsilosis to Exogenous Tyrosol. Appl Environ Microbiol 85(20)
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. parapsilosis |CDR1 |FAD2 |FAD3 |MDR1
C. albicans |CDR1 |FAD2 |FAD3 |MDR1
Karkowska-Kuleta J, et al. (2019) Moonlighting proteins are variably exposed at the cell surfaces of Candida glabrata, Candida parapsilosis and Candida tropicalis under certain growth conditions. BMC Microbiol 19(1):149
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |ENO1 |PDC11 |TDH3
C. glabrata |ADH1 |AHP1 |BAT2 |CAGL0H06633g |CAGL0K03289g |ENO1 |FBA1 |GND1 |GPM1 |IPP1 |PDC |PGI1 |PGK1 |PMU1 |MORE
C. parapsilosis |ADH1 |ALD5 |CPAR2_101620 |CPAR2_202600 |CPAR2_207210 |CPAR2_211810 |CPAR2_401230 |CPAR2_602950 |CPAR2_807980 |CPAR2_808670 |GND1 |ILV5 |PDC11 |PGI1
Konecna K, et al. (2019) A comparative analysis of protein virulence factors released via extracellular vesicles in two Candida albicans strains cultivated in a nutrient-limited medium. Microb Pathog 136:103666
CGD Papers Entry  Pubmed Entry  
Large-scale protein localizationC. albicans |ALS2 |ALS3 |ALS4 |ASC1 |ATC1 |BGL2 |BMH1 |CRH11 |ECM33 |ENO1 |FET34 |HEX1 |HSP90 |MP65 |MORE
Lee SY, et al. (2019) The Transcription Factor Sfp1 Regulates the Oxidative Stress Response in Candida albicans. Microorganisms 7(5)
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |CAP1 |HOG1 |SFP1
Liao Z, et al. (2019) Metabonomics on Candida albicans indicate the excessive H3K56ac is involved in the antifungal activity of Shikonin. Emerg Microbes Infect 8(1):1243-1253
CGD Papers Entry  Pubmed Entry  
Other large-scale proteomic analysisC. albicans |HST3
Lombardi L, et al. (2019) Characterization of the Candida orthopsilosis agglutinin-like sequence (ALS) genes. PLoS One 14(4):e0215912
CGD Papers Entry  Pubmed Entry  
Computational analysis
McCarthy CGP and Fitzpatrick DA (2019) Pan-genome analyses of model fungal species. Microb Genom 5(2)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Other genomic analysis
O'Meara TR, et al. (2019) Global proteomic analyses define an environmentally contingent Hsp90 interactome and reveal chaperone-dependent regulation of stress granule proteins and the R2TP complex in a fungal pathogen. PLoS Biol 17(7):e3000358
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale protein interactionC. albicans |AHA1 |C3_00950C_A |CDC37 |CNS1 |CPR6 |HCH1 |HSP90 |RVB1 |RVB2 |SBA1 |SGT1 |STI1
Result Page : 12345678910111213141516171819Next



Return to CGD
Send a Message to the CGD Curators