Genome-wide Analysis papers

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Genome-wide AnalysisProteome-wide Analysis
Comparative genomic hybridizationLarge-scale protein detection
Computational analysisLarge-scale protein interaction
Genomic co-immunoprecipitation studyLarge-scale protein localization
Genomic expression studyLarge-scale protein modification
Large-scale genetic interactionOther large-scale proteomic analysis
Large-scale phenotype analysis 
Other genomic analysis 

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ReferenceLiterature TopicSpeciesGenes Addressed
Barber AE, et al. (2019) Comparative Genomics of Serial Candida glabrata Isolates and the Rapid Acquisition of Echinocandin Resistance during Therapy. Antimicrob Agents Chemother 63(2)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Other genomic analysisC. glabrata |FKS2 |FPR1 |MDE1
Bravo Ruiz G, et al. (2019) Rapid and extensive karyotype diversification in haploid clinical Candida auris isolates. Curr Genet
CGD Papers Entry  Pubmed Entry  
Other genomic analysis
Carrete L, et al. (2019) Genome Comparisons of Candida glabrata Serial Clinical Isolates Reveal Patterns of Genetic Variation in Infecting Clonal Populations. Front Microbiol 10:112
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Other genomic analysisC. albicans |CDR1 |CDR2 |ERG11 |ERG3 |ERG9 |FEN1 |GSL2 |QDR2 |SNQ2
C. glabrata |CAGL0B00242g |CAGL0F09273g |CAGL0J01774g |CAGL0J02530g |CAGL0L00227g |CAGL0M08756g |CDR1 |ERG11 |ERG3 |ERG9 |FEN1 |FKS1 |FKS2 |FLR1 |MORE
Das S, et al. (2019) Network analysis of hyphae forming proteins in Candida albicans identifies important proteins responsible for pathovirulence in the organism. Heliyon 5(6):e01916
CGD Papers Entry  Pubmed Entry  
Computational analysisC. albicans |ACT1 |BEM1 |CDC10 |CDC11 |CDC24 |CDC28 |CDC42 |CLA4 |CLN3 |CYR1 |HGC1 |HOG1 |HSP90 |PBS2 |MORE
Duvenage L, et al. (2019) Inhibition of Classical and Alternative Modes of Respiration in Candida albicans Leads to Cell Wall Remodeling and Increased Macrophage Recognition. MBio 10(1)
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |AOX1 |AOX2 |FBP1 |GPM1 |GPM2 |ICL1 |MLS1 |PCK1 |PGI1 |PGK1 |UPC2 |YHB1
Guo X, et al. (2019) Understand the genomic diversity and evolution of fungal pathogen Candida glabrata by genome-wide analysis of genetic variations. Methods
CGD Papers Entry  Pubmed Entry  
Computational analysisC. glabrata |CST6 |EPA10 |EPA9
Huang MY, et al. (2019) Circuit diversification in a biofilm regulatory network. PLoS Pathog 15(5):e1007787
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |BCR1 |BRG1 |EFG1 |UME6
Islam A, et al. (2019) Mms21: A Putative SUMO E3 Ligase in Candida albicans That Negatively Regulates Invasiveness and Filamentation, and Is Required for the Genotoxic and Cellular Stress Response. Genetics 211(2):579-595
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |ALS1 |ALS3 |BUB3 |DAP1 |ECE1 |EFG1 |HGC1 |HNT2 |HWP1 |MMS21 |PGA13 |PGA26 |RAD2 |SOD4 |MORE
Jakab A, et al. (2019) Physiological and transcriptional response of Candida parapsilosis to exogenous tyrosol. Appl Environ Microbiol
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. parapsilosis |CDR1 |FAD2 |FAD3 |MDR1
C. albicans |CDR1 |FAD2 |FAD3 |MDR1
Karkowska-Kuleta J, et al. (2019) Moonlighting proteins are variably exposed at the cell surfaces of Candida glabrata, Candida parapsilosis and Candida tropicalis under certain growth conditions. BMC Microbiol 19(1):149
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |ENO1 |PDC11 |TDH3
C. glabrata |ADH1 |AHP1 |BAT2 |CAGL0H06633g |CAGL0K03289g |ENO1 |FBA1 |GND1 |GPM1 |IPP1 |PDC |PGI1 |PGK1 |PMU1 |MORE
C. parapsilosis |ADH1 |ALD5 |CPAR2_101620 |CPAR2_202600 |CPAR2_207210 |CPAR2_211810 |CPAR2_401230 |CPAR2_602950 |CPAR2_807980 |CPAR2_808670 |GND1 |ILV5 |PDC11 |PGI1
Konecna K, et al. (2019) A comparative analysis of protein virulence factors released via extracellular vesicles in two Candida albicans strains cultivated in a nutrient-limited medium. Microb Pathog 136:103666
CGD Papers Entry  Pubmed Entry  
Large-scale protein localizationC. albicans |ALS2 |ALS3 |ALS4 |ASC1 |ATC1 |BGL2 |BMH1 |CRH11 |ECM33 |ENO1 |FET34 |HEX1 |HSP90 |MP65 |MORE
Lee SY, et al. (2019) The Transcription Factor Sfp1 Regulates the Oxidative Stress Response in Candida albicans. Microorganisms 7(5)
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |CAP1 |HOG1 |SFP1
Lombardi L, et al. (2019) Characterization of the Candida orthopsilosis agglutinin-like sequence (ALS) genes. PLoS One 14(4):e0215912
CGD Papers Entry  Pubmed Entry  
Computational analysis
McCarthy CGP and Fitzpatrick DA (2019) Pan-genome analyses of model fungal species. Microb Genom 5(2)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Other genomic analysis
O'Meara TR, et al. (2019) Global proteomic analyses define an environmentally contingent Hsp90 interactome and reveal chaperone-dependent regulation of stress granule proteins and the R2TP complex in a fungal pathogen. PLoS Biol 17(7):e3000358
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale protein interactionC. albicans |AHA1 |C3_00950C_A |CDC37 |CNS1 |CPR6 |HCH1 |HSP90 |RVB1 |RVB2 |SBA1 |SGT1 |STI1
Sellam A, et al. (2019) The p38/HOG stress-activated protein kinase network couples growth to division in Candida albicans. PLoS Genet 15(3):e1008052
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale phenotype analysisC. albicans |ACE2 |AHR1 |ARO80 |ASG1 |ASH1 |BAS1 |BCR1 |C2_01870C_A |C2_05640W_A |C2_06600W_A |C2_08860W_A |C2_10540W_A |C2_10700C_A |C4_05870C_A |MORE
Shivarathri R, et al. (2019) The Fungal Histone Acetyl Transferase Gcn5 Controls Virulence of the Human Pathogen Candida albicans through Multiple Pathways. Sci Rep 9(1):9445
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |CEK1 |EFG1 |GCN5 |GSC1 |GSL1 |HOG1 |MKC1
Spettel K, et al. (2019) Analysis of antifungal resistance genes in Candida albicans and Candida glabrata using next generation sequencing. PLoS One 14(1):e0210397
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale phenotype analysisC. albicans |CDR1 |ERG11 |ERG3 |GSC1 |GSL1 |GSL2 |TAC1
C. glabrata |CDR1 |ERG11 |ERG3 |FKS1 |FKS2
Yeh SJ, et al. (2019) Investigating Common Pathogenic Mechanisms between Homo sapiens and Different Strains of Candida albicans for Drug Design: Systems Biology Approach via Two-Sided NGS Data Identification. Toxins (Basel) 11(2)
CGD Papers Entry  Pubmed Entry  
Computational analysisC. albicans |FLO8 |HHF22 |NAM7 |SAP5 |SAP6 |SAS2 |SUV3 |YBP1
Allert S, et al. (2018) Candida albicans-Induced Epithelial Damage Mediates Translocation through Intestinal Barriers. MBio 9(3)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale phenotype analysisC. albicans |AAF1 |ALS3 |BAS1 |C1_01490W_A |C1_07480C_A |CPH1 |DEF1 |ECE1 |HGC1 |HMA1 |KEX1 |NPR2 |PEP12 |SAP1 |MORE
Awad A, et al. (2018) Proteomic analysis of a Candida albicans pga1 Null Strain. EuPA Open Proteom 18:1-6
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |APE2 |CDC11 |CDR1 |CDR2 |CFL1 |CR_03530W_A |EGD2 |ERG1 |ERG11 |EXG2 |HSP70 |HSP90 |INT1 |LIP10 |MORE
Awad A, et al. (2018) Tandem Mass Spectrometric Cell Wall Proteome Profiling of a Candida albicans hwp2 Mutant Strain. Curr Mol Pharmacol 11(3):211-225
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |CHT2 |HWP2 |MTS1 |PGA28 |PGA32 |PGA41 |PGA50 |PHR1 |RBR1 |SAP10 |SAP4 |SAP5
Biswas C, et al. (2018) Whole Genome Sequencing of Australian Candida glabrata Isolates Reveals Genetic Diversity and Novel Sequence Types. Front Microbiol 9:2946
CGD Papers Entry  Pubmed Entry  
Other genomic analysisC. glabrata |FKS1 |FKS2 |MSH2 |PDR1
Caplan T, et al. (2018) Functional Genomic Screening Reveals Core Modulators of Echinocandin Stress Responses in Candida albicans. Cell Rep 23(8):2292-2298
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale phenotype analysisC. albicans |AHR1 |BCK1 |C6_00530C_A |CAS5 |CAT1 |CCT8 |DBP8 |GSC1 |GSL1 |HSP90 |KEX2 |MKC1 |NOP14 |PKC1 |MORE
Chen Y, et al. (2018) Chemogenomic Profiling of the Fungal Pathogen Candida albicans. Antimicrob Agents Chemother 62(2)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale phenotype analysisC. albicans |ADP1 |AGM1 |ALO1 |C1_07050C_A |C1_10320W_A |C1_14500C_A |C2_05290C_A |C3_03110W_A |C4_00470C_A |C4_04870C_A |C5_00560W_A |C6_00430C_A |C6_02410W_A |CHS7 |MORE
El Khoury P, et al. (2018) Proteomic analysis of a Candida albicans pir32 null strain reveals proteins involved in adhesion, filamentation and virulence. PLoS One 13(3):e0194403
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale protein detectionC. albicans |ALS3 |CDC42 |CSA2 |DCW1 |DFG5 |PIR32 |RBT5 |SSR1 |SSU81 |UCF1 |XOG1
Forche A, et al. (2018) Rapid Phenotypic and Genotypic Diversification After Exposure to the Oral Host Niche in Candida albicans. Genetics 209(3):725-741
CGD Papers Entry  Pubmed Entry  
Other genomic analysisC. albicans |GAL1
Ghorai P, et al. (2018) A comprehensive analysis of Candida albicans phosphoproteome reveals dynamic changes in phosphoprotein abundance during hyphal morphogenesis. Appl Microbiol Biotechnol 102(22):9731-9743
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale protein modification
Herrero-de-Dios C, et al. (2018) Redox Regulation, Rather than Stress-Induced Phosphorylation, of a Hog1 Mitogen-Activated Protein Kinase Modulates Its Nitrosative-Stress-Specific Outputs. MBio 9(2)
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |HOG1
Huang M and Kao KC (2018) Identifying novel genetic determinants for oxidative stress tolerance in Candida glabrata via adaptive laboratory evolution. Yeast 35(11):605-618
CGD Papers Entry  Pubmed Entry  
Large-scale phenotype analysisC. glabrata |CAGL0C00385g |CAGL0F06831g |CTH2
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