Genome-wide Analysis papers

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Genome-wide AnalysisProteome-wide Analysis
Comparative genomic hybridizationLarge-scale protein detection
Computational analysisLarge-scale protein interaction
Genomic co-immunoprecipitation studyLarge-scale protein localization
Genomic expression studyLarge-scale protein modification
Large-scale genetic interactionOther large-scale proteomic analysis
Large-scale phenotype analysis 
Other genomic analysis 

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ReferenceLiterature TopicSpeciesGenes Addressed
Alkafeef SS, et al. (2020) Proteomic profiling of the monothiol glutaredoxin Grx3 reveals its global role in the regulation of iron dependent processes. PLoS Genet 16(6):e1008881
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale protein interactionC. albicans |C1_07630W_A |GRX3 |HAP43 |SFU1
Alves R, et al. (2020) Transcriptional responses of Candida glabrata biofilm cells to fluconazole are modulated by the carbon source. NPJ Biofilms Microbiomes 6:4
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. glabrata |CAGL0F08239g |CAGL0J07980g |CAGL0K10274g |ERG11 |ERG9 |FTR1 |MGE1
Balachandra VK, et al. (2020) The RSC (Remodels the Structure of Chromatin) complex of Candida albicans shows compositional divergence with distinct roles in regulating pathogenic traits PLoS Genet
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Genomic expression studyC. albicans |ARP7 |ARP9 |NPL6 |NRI1 |NRI2 |RSC2 |RSC4 |RSC58 |RSC8 |RSC9 |SFH1 |SNF12 |STH1
Caplan T, et al. (2020) Overcoming Fungal Echinocandin Resistance through Inhibition of the Non-essential Stress Kinase Yck2. Cell Chem Biol
CGD Papers Entry  Pubmed Entry  
Large-scale phenotype analysisC. albicans |ALS3 |CHS1 |CHS2 |CHS3 |CHS8 |DDR48 |HRR25 |SOD5 |STP4 |URK1 |YCK2
Cheng R, et al. (2020) Characterization of the transcriptional response of Candida parapsilosis to the antifungal peptide MAF-1A PeerJ 8:e9767
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. parapsilosis |CPAR2_203780 |CPAR2_208190 |CPAR2_213060 |CPAR2_404910 |CPAR2_700300 |CPAR2_702930 |CPAR2_800950 |CPAR2_807700 |CPAR2_807710 |LIP2
Dawson CS, et al. (2020) Protein markers for Candida albicans EVs include claudin-like Sur7 family proteins. J Extracell Vesicles 9(1):1750810
CGD Papers Entry  Pubmed Entry  
Large-scale protein localizationC. albicans |ARF3 |BGL2 |BRO1 |C1_04200C_A |C2_08160C_A |C4_04800W_A |CAN1 |CAN2 |CDC42 |CDR1 |CDR2 |CHS3 |CRH11 |ECM33 |MORE
Delarze E, et al. (2020) Identification and Characterization of Mediators of Fluconazole Tolerance in Candida albicans Front Microbiol 11:591140
CGD Papers Entry  Pubmed Entry  
Genomic expression study, Large-scale phenotype analysisC. albicans |ASF1 |CKA1 |CPH1 |CRZ1 |CSC25 |CSK1 |ESP1 |GZF3 |KNS1 |KRE1 |LCB4 |MBF1 |PGA28 |PGA42 |MORE
Doing G, et al. (2020) Conditional antagonism in co-cultures of Pseudomonas aeruginosa and Candida albicans: An intersection of ethanol and phosphate signaling distilled from dual-seq transcriptomics. PLoS Genet 16(8):e1008783
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Genomic expression studyC. albicans |ADH1 |PHO4
Ev LD, et al. (2020) The role of Candida albicans in root caries biofilms: an RNA-seq analysis. J Appl Oral Sci 28:e20190578
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |ASR1 |C3_01020W_A |C7_03850W_A |GUT1 |HGT19 |ITR1 |STT4 |UTP20
Fan S, et al. (2020) Discovery of the Diploid Form of the Emerging Fungal Pathogen Candida auris ACS Infect Dis 6(10):2641-2646
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Genomic expression studyC. auris |B9J08_000020 |B9J08_002513 |B9J08_004914
Feng J, et al. (2020) Hof1 plays a checkpoint related role in MMS induced DNA damage response in Candida albicans. Mol Biol Cell :mbcE19060316
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Large-scale phenotype analysisC. albicans |HOF1 |NOC2 |RAD23 |RAD4 |RAD53
Goncalves B, et al. (2020) Effect of progesterone on Candida albicans biofilm formation under acidic conditions: A transcriptomic analysis. Int J Med Microbiol :151414
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |ADH2 |AGP3 |AHR1 |ALS1 |ALS5 |ATO1 |ATP6 |ATP9 |BRG1 |C1_00160C_A |C1_01130W_A |C1_01630W_A |C1_07160C_A |C1_13130C_A |MORE
Gong J, et al. (2020) The Als3 cell wall adhesin plays a critical role in human Serum amyloid A1 (SAA1)-induced cell death and aggregation in Candida albicans. Antimicrob Agents Chemother
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |AHR1 |ALS3 |BCR1 |EFG1
Jenull S, et al. (2020) ATAC-Seq Identifies Chromatin Landscapes Linked to the Regulation of Oxidative Stress in the Human Fungal Pathogen Candida albicans J Fungi (Basel) 6:E182
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Other genomic analysisC. albicans |CAP1
Khemiri I, et al. (2020) Transcriptome Analysis Uncovers a Link Between Copper Metabolism, and Both Fungal Fitness and Antifungal Sensitivity in the Opportunistic Yeast Candida albicans. Front Microbiol 11:935
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Genomic expression studyC. albicans |ATX1 |CRP1 |CTR1 |CUP1 |FRE7 |MAC1
Komathy M, et al. (2020) LC-MS analysis reveals biological and metabolic processes essential for Candida albicans biofilm growth Microb Pathog
CGD Papers Entry  Pubmed Entry  
Large-scale protein localization
Kuloyo O, et al. (2020) Transcriptome Analyses of Candida albicans Biofilms, Exposed to Arachidonic Acid and Fluconazole, Indicates Potential Drug Targets G3 (Bethesda) 10:3099-3108
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Genomic expression studyC. albicans |ADH1 |ALD6 |CAT1 |CSH1 |CYB5 |DBP3 |DBP7 |DRS1 |ERG1 |ERG11 |ERG3 |ERG9 |GCA1 |HPD1 |MORE
Lagree K, et al. (2020) Roles of Candida albicans Mig1 and Mig2 in glucose repression, pathogenicity traits, and SNF1 essentiality. PLoS Genet 16(1):e1008582
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |CDC19 |CTN1 |ENO1 |FOX2 |GAL1 |GPM1 |HGT1 |HXK2 |ICL1 |MIG1 |MIG2 |MLS1 |PFK1 |PFK2 |MORE
Marton T, et al. (2020) Use of CRISPR-Cas9 To Target Homologous Recombination Limits Transformation-Induced Genomic Changes in Candida albicans mSphere 5:e00620-20
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Large-scale phenotype analysisC. albicans |CDR3 |RPS1
Miramon P, et al. (2020) The paralogous transcription factors Stp1 and Stp2 of Candida albicans have distinct functions in nutrient acquisition and host interaction. Infect Immun
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |PTR3 |SFL2 |SSY1 |SSY5 |STP1 |STP2 |UME6
Oliver JC, et al. (2020) Metabolic profiling of Candida clinical isolates of different species and infection sources Sci Rep 10:16716
CGD Papers Entry  Pubmed Entry  
Other large-scale proteomic analysis
P?rn?nen P, et al. (2020) Isolation, characterization and regulation of moonlighting proteases from Candida glabrata cell wall Microb Pathog
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. glabrata |CAGL0D00176g |MET6 |PGI1 |PGK1 |TAL1
Pais P, et al. (2020) A new regulator in the crossroads of oxidative stress resistance and virulence in Candida glabrata: The transcription factor CgTog1 Virulence 11:1522-1538
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Genomic expression studyC. glabrata |CAGL0A01606g |CAGL0B02079g |CAGL0D02640g |CAGL0E00649g |CAGL0F00649g |CAGL0F05709g |CAGL0G07931g |CAGL0H02491g |CAGL0I00116g |CAGL0K07942g |CAGL0M12001g |MIG1 |NCE103 |TOG1
Rasheed M, et al. (2020) Global Secretome Characterization of the Pathogenic Yeast Candida glabrata. J Proteome Res 19(1):49-63
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale protein localizationC. glabrata |ACT1 |ADH1 |AHP1 |ATH1 |CAGL0A00979g |CAGL0A01474g |CAGL0A01540g |CAGL0A01870g |CAGL0A03117g |CAGL0A03278g |CAGL0B01100g |CAGL0C02453g |CAGL0C02475g |CAGL0C04389g |MORE
Shahi G, et al. (2020) A detailed lipidomic study of human pathogenic fungi Candida auris FEMS Yeast Res 20:foaa045
CGD Papers Entry  Pubmed Entry  
Other large-scale proteomic analysis
Sitterle E, et al. (2020) Large-scale genome mining allows identification of neutral polymorphisms and novel resistance mutations in genes involved in Candida albicans resistance to azoles and echinocandins. J Antimicrob Chemother
CGD Papers Entry  Pubmed Entry  
Other genomic analysisC. albicans |ERG11 |GSC1 |GSL1 |MRR1 |TAC1 |UPC2
Thakre A, et al. (2020) Oxidative stress induced by piperine leads to apoptosis in Candida albicans. Med Mycol
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |C1_01490W_A |C2_07070W_A |C6_04290W_A |CAT2 |CDC37 |FRS2 |GDH2 |GLO3 |MCA1 |MNT1 |PEX19 |PYC2 |RPN1 |SDH2 |MORE
Thomas G, et al. (2020) Identifying Candida albicans Gene Networks Involved in Pathogenicity. Front Genet 11:375
CGD Papers Entry  Pubmed Entry  
Computational analysis, Genomic expression studyC. albicans |AHR1 |CST20 |GRR1 |HGC1 |HIT1 |HOG1 |HST7 |HWP1 |INT1 |PBS2 |PEP8 |RIM101 |RSR1 |SEF1 |MORE
Truong T, et al. (2020) Proteomics Analysis of Candida albicans dnm1 Haploid Mutant Unraveled the Association Between Mitochondrial Fission and Antifungal Susceptibility. Proteomics :e1900240
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Large-scale protein detection, Genomic expression studyC. albicans |DNM1
Verma R, et al. (2020) Genome-wide screening and in silico gene knockout to predict potential candidates for drug designing against Candida albicans. Infect Genet Evol :104196
CGD Papers Entry  Pubmed Entry  
Computational analysisC. albicans |ERG5 |FAS2 |FOL1
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