| Reference | Literature Topic | Species | Genes Addressed |
|---|
Beekman CN, et al. (2021) Comparative genomics of white and opaque cell states supports an epigenetic mechanism of phenotypic switching in Candida albicans G3 (Bethesda) 11:jkab001
  | Genomic expression study |
Bliss JM, et al. (2021) Transcription Profiles Associated with Inducible Adhesion in Candida parapsilosis mSphere 6:e01071-20
  | Genomic expression study | C. parapsilosis | |CPAR2_200650 |CPAR2_302140 |CPAR2_400510 |CPAR2_701230 |
Chew SY, et al. (2021) Transcriptomic and proteomic profiling revealed reprogramming of carbon metabolism in acetate-grown human pathogen Candida glabrata J Biomed Sci 28:1
| Genomic expression study | C. glabrata | |AAT1 |ACO1 |ADH2 |CAGL0H05137g |CAGL0J00451g |CIT1 |CTA1 |ENO1 |FBP1 |GCV1 |GPM1 |HXK2 |ICL1 |IDP2 |MORE |
Fourie R, et al. (2021) Transcriptional response of Candida albicans to Pseudomonas aeruginosa in a polymicrobial biofilm G3 (Bethesda)
| Genomic expression study | C. albicans | |ADH2 |ADH3 |ADH5 |C2_04480W_A |CAT1 |CSA1 |CTA4 |ECE1 |FDH3 |GAL4 |HWP1 |HYR1 |RBT1 |RBT4 |MORE |
Goncalves B, et al. (2021) Revealing Candida glabrata biofilm matrix proteome: global characterization and pH response Biochem J
| Large-scale protein localization | C. glabrata | |ACT1 |AED1 |AHP1 |ALD4 |ARG1 |ARO8 |ASC1 |ATH1 |ATP1 |ATP2 |AWP12 |AWP3 |AWP6 |BMH1(B) |MORE |
Hunsaker EW, et al. (2021) Copper Availability Influences the Transcriptomic Response of Candida albicans to Fluconazole Stress G3 (Bethesda)
| Genomic expression study | C. albicans | |ATX1 |CCC2 |CRD2 |CRP1 |CTR1 |CUP1 |FET3 |MAC1 |SOD6 |
Li P, et al. (2021) Proteomic Analysis of Caspofungin-Induced Responses in Planktonic Cells and Biofilms of Candida albicans Front Microbiol 12:639123
| Large-scale protein detection | C. albicans | |LSP1 |PIL1 |
Mixao V, et al. (2021) Extreme diversification driven by parallel events of massive loss of heterozygosity in the hybrid lineage of Candida albicans Genetics 217:iyaa004
| Other genomic analysis |
Mukherjee S, et al. (2021) Exploring the druggable proteome of Candida species through comprehensive computational analysis Genomics
| Computational analysis | C. albicans | |ALT1 |ARG3 |ARG8 |ERG4 |HIS5 |LYS9 |
Mundodi V, et al. (2021) Global translational landscape of the Candida albicans morphological transition G3 (Bethesda) 11:jkaa043
| Genomic expression study | C. albicans | |ALG6 |BEM1 |C3_05990C_A |CEK1 |CHS7 |CTA2 |CWH8 |DDC1 |DDR48 |ECE1 |HMS1 |HWP1 |HXK1 |INO2 |MORE |
Munoz JF, et al. (2021) Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris Genetics
| Other genomic analysis | C. albicans | |ERG11 |
| | C. auris | |B9J08_000020 |B9J08_001049 |B9J08_001512 |B9J08_001533 |B9J08_001960 |B9J08_002580 |B9J08_004095 |B9J08_004119 |B9J08_004456 |B9J08_004881 |B9J08_004907 |B9J08_005531 |
O'Meara TR and O'Meara MJ (2021) DeORFanizing Candida albicans Genes using Coexpression mSphere 6:e01245-20
| Computational analysis | C. albicans | |CCJ1 |
Pal SE, et al. (2021) A Candida parapsilosis Overexpression Collection Reveals Genes Required for Pathogenesis J Fungi (Basel) 7:97
| Large-scale phenotype analysis | C. parapsilosis | |CPAR2_100540 |CPAR2_104420 |CPAR2_105250 |CPAR2_107020 |CPAR2_107240 |CPAR2_108840 |CPAR2_109520 |CPAR2_200040 |CPAR2_200390 |CPAR2_201920 |CPAR2_205060 |CPAR2_209240 |CPAR2_209520 |CPAR2_300080 |MORE |
Singh-Babak SD, et al. (2021) Lineage-specific selection and the evolution of virulence in the Candida clade Proc Natl Acad Sci U S A 118:e2016818118
| Genomic expression study | C. albicans | |CDC19 |ENO1 |FBA1 |GLK1 |GLK4 |GPM1 |HXK2 |PFK1 |PFK2 |PFK26 |PGI1 |PGK1 |TDH3 |TPI1 |
Sircaik S, et al. (2021) The protein kinase Ire1 impacts pathogenicity of Candida albicans by regulating homeostatic adaptation to endoplasmic reticulum stress Cell Microbiol
| Genomic expression study | C. albicans | |IRE1 |
Vazquez-Fernandez P, et al. (2021) A comparative proteomic analysis of Candida species in response to the oxidizing agent cumene hydroperoxide Arch Microbiol
| Large-scale protein localization |
Zheng H, et al. (2021) Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in Candida albicans mSystems 6:e01129-20
| Large-scale protein modification | C. albicans | |RPL39 |RPL9B |RPS18 |RPS5 |
Zhou X, et al. (2021) Systematic Analysis of the Lysine Crotonylome and Multiple Posttranslational Modification Analysis (Acetylation, Succinylation, and Crotonylation) in Candida albicans mSystems 6:e01316-20
| Large-scale protein modification | C. albicans | |C1_04180W_A |HHF1 |HHT1 |HHT21 |HTA1 |HTA2 |HTA3 |HTB1 |RPL10 |RPL10A |RPL12 |RPL13 |RPL15A |RPL3 |MORE |
Alkafeef SS, et al. (2020) Proteomic profiling of the monothiol glutaredoxin Grx3 reveals its global role in the regulation of iron dependent processes. PLoS Genet 16(6):e1008881
| Large-scale protein interaction | C. albicans | |C1_07630W_A |GRX3 |HAP43 |SFU1 |
Alves R, et al. (2020) Transcriptional responses of Candida glabrata biofilm cells to fluconazole are modulated by the carbon source. NPJ Biofilms Microbiomes 6:4
| Genomic expression study | C. glabrata | |CAGL0F08239g |CAGL0J07980g |CAGL0K10274g |ERG11 |ERG9 |FTR1 |MGE1 |
Balachandra VK, et al. (2020) The RSC (Remodels the Structure of Chromatin) complex of Candida albicans shows compositional divergence with distinct roles in regulating pathogenic traits PLoS Genet
| Genomic expression study | C. albicans | |ARP7 |ARP9 |NPL6 |NRI1 |NRI2 |RSC2 |RSC4 |RSC58 |RSC8 |RSC9 |SFH1 |SNF12 |STH1 |
Caplan T, et al. (2020) Overcoming Fungal Echinocandin Resistance through Inhibition of the Non-essential Stress Kinase Yck2. Cell Chem Biol
| Large-scale phenotype analysis | C. albicans | |ALS3 |CHS1 |CHS2 |CHS3 |CHS8 |DDR48 |HRR25 |SOD5 |STP4 |URK1 |YCK2 |
Cheng R, et al. (2020) Characterization of the transcriptional response of Candida parapsilosis to the antifungal peptide MAF-1A PeerJ 8:e9767
| Genomic expression study | C. parapsilosis | |CPAR2_203780 |CPAR2_208190 |CPAR2_213060 |CPAR2_404910 |CPAR2_700300 |CPAR2_702930 |CPAR2_800950 |CPAR2_807700 |CPAR2_807710 |LIP2 |
Dawson CS, et al. (2020) Protein markers for Candida albicans EVs include claudin-like Sur7 family proteins. J Extracell Vesicles 9(1):1750810
| Large-scale protein localization | C. albicans | |ARF3 |BGL2 |BRO1 |C1_04200C_A |C2_08160C_A |C4_04800W_A |CAN1 |CAN2 |CDC42 |CDR1 |CDR2 |CHS3 |CRH11 |ECM33 |MORE |
Delarze E, et al. (2020) Identification and Characterization of Mediators of Fluconazole Tolerance in Candida albicans Front Microbiol 11:591140
| Genomic expression study, Large-scale phenotype analysis | C. albicans | |ASF1 |CKA1 |CPH1 |CRZ1 |CSC25 |CSK1 |ESP1 |GZF3 |KNS1 |KRE1 |LCB4 |MBF1 |PGA28 |PGA42 |MORE |
Doing G, et al. (2020) Conditional antagonism in co-cultures of Pseudomonas aeruginosa and Candida albicans: An intersection of ethanol and phosphate signaling distilled from dual-seq transcriptomics. PLoS Genet 16(8):e1008783
| Genomic expression study | C. albicans | |ADH1 |PHO4 |
Ev LD, et al. (2020) The role of Candida albicans in root caries biofilms: an RNA-seq analysis. J Appl Oral Sci 28:e20190578
| Genomic expression study | C. albicans | |ASR1 |C3_01020W_A |C7_03850W_A |GUT1 |HGT19 |ITR1 |STT4 |UTP20 |
Fan S, et al. (2020) Discovery of the Diploid Form of the Emerging Fungal Pathogen Candida auris ACS Infect Dis 6(10):2641-2646
| Genomic expression study | C. auris | |B9J08_000020 |B9J08_002513 |B9J08_004914 |
Feng J, et al. (2020) Hof1 plays a checkpoint related role in MMS induced DNA damage response in Candida albicans. Mol Biol Cell :mbcE19060316
| Large-scale phenotype analysis | C. albicans | |HOF1 |NOC2 |RAD23 |RAD4 |RAD53 |
Goncalves B, et al. (2020) Effect of progesterone on Candida albicans biofilm formation under acidic conditions: A transcriptomic analysis. Int J Med Microbiol :151414
| Genomic expression study | C. albicans | |ADH2 |AGP3 |AHR1 |ALS1 |ALS5 |ATO1 |ATP6 |ATP9 |BRG1 |C1_00160C_A |C1_01130W_A |C1_01630W_A |C1_07160C_A |C1_13130C_A |MORE |
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