Genome-wide Analysis papers

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Genome-wide AnalysisProteome-wide Analysis
Comparative genomic hybridizationLarge-scale protein detection
Computational analysisLarge-scale protein interaction
Genomic co-immunoprecipitation studyLarge-scale protein localization
Genomic expression studyLarge-scale protein modification
Large-scale genetic interactionOther large-scale proteomic analysis
Large-scale phenotype analysis 
Other genomic analysis 

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ReferenceLiterature TopicSpeciesGenes Addressed
Bernardo RT, et al. (2017) The CgHaa1-Regulon Mediates Response and Tolerance to Acetic Acid Stress in the Human Pathogen Candida glabrata. G3 (Bethesda) 7(1):1-18
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. glabrata |CAGL0E03740g |CAGL0G05632g |FPS1 |FPS2 |HAA1 |PMA1 |RSB1 |SSA3 |TPO3 |YPS4
Chaillot J, et al. (2017) Genome-Wide Screen for Haploinsufficient Cell Size Genes in the Opportunistic Yeast Candida albicans. G3 (Bethesda) 7(2):355-360
CGD Papers Entry  Pubmed Entry  
Large-scale phenotype analysisC. albicans |ABD1 |ADE6 |AFT2 |AGM1 |AHR1 |ALI1 |ALK6 |ALK8 |ALO1 |ALT1 |APS3 |ARC19 |ARF3 |ARO3 |MORE
Leach MD, et al. (2017) Candida albicans Is Resistant to Polyglutamine Aggregation and Toxicity. G3 (Bethesda) 7(1):95-108
CGD Papers Entry  Pubmed Entry  
Other large-scale proteomic analysisC. albicans |SGT2 |SIS1
Ansari MA, et al. (2016) Anticandidal Effect and Mechanisms of Monoterpenoid, Perillyl Alcohol against Candida albicans. PLoS One 11(9):e0162465
CGD Papers Entry  Pubmed Entry  Reference LINKOUT  
Genomic expression studyC. albicans |CLB4 |CNB1 |CSM3 |DOT5 |GLN3 |HWP1 |KRE62 |RAD57 |RFX2 |SKO1 |SPC98 |TPK1 |VCX1
Ansari MA, et al. (2016) Mechanistic insights into the mode of action of anticandidal sesamol. Microb Pathog 98:140-8
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |ASH2 |BZZ1 |C1_14240W_A |C3_03830W_A |C4_06800W_A |CDC14 |CR_06960W_A |CSM3 |DLH1 |DUT1 |FTR2 |KAR5 |MSH6 |PCL7 |MORE
Bohm L, et al. (2016) A Candida albicans regulator of disseminated infection operates primarily as a repressor and governs cell surface remodeling. Mol Microbiol 100(2):328-44
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |ZCF21
Cabezon V, et al. (2016) Apoptosis of Candida albicans during the Interaction with Murine Macrophages: Proteomics and Cell-Death Marker Monitoring. J Proteome Res 15(5):1418-34
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |CDC48 |FBA1 |GPM1 |MCA1 |PMM1 |RCT1 |SSB1 |TAL1
Degani G, et al. (2016) Genomic and functional analyses unveil the response to hyphal wall stress in Candida albicans cells lacking beta(1,3)-glucan remodeling. BMC Genomics 17(1):482
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |C1_04940C_A |CCN1 |CDC28 |CHS2 |CHS3 |CHS7 |CHS8 |CPP1 |CRH11 |CWH8 |DUN1 |ECM331 |FLC2 |GIN4 |MORE
Dutton LC, et al. (2016) Transcriptional landscape of trans-kingdom communication between Candida albicans and Streptococcus gordonii. Mol Oral Microbiol 31(2):136-61
CGD Papers Entry  Pubmed Entry  Reference LINKOUT  
Genomic expression studyC. albicans |ALS1 |ARG1 |ARG3 |ARG4 |CAT1 |CEK1 |CIP1 |CPA2 |DFG5 |FGR42 |GLR1 |HSP21 |HYR1 |PGA34 |MORE
Fiorini A, et al. (2016) Candida albicans PROTEIN PROFILE CHANGES IN RESPONSE TO THE BUTANOLIC EXTRACT OF Sapindus saponariaL. Rev Inst Med Trop Sao Paulo 58:25
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |ASC1 |ENO1 |FBA1 |GPM1 |ILV5 |PDC11
Gerwien F, et al. (2016) A Novel Hybrid Iron Regulation Network Combines Features from Pathogenic and Nonpathogenic Yeasts. MBio 7(5)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. glabrata |ACO1 |AFT1 |ALG5 |ANP1 |ARB1 |ARG81 |ASK10 |ATM1 |BCK1 |BCY1 |BIG1 |CBK1 |CCC1 |CCH1 |MORE
Hellwig D, et al. (2016) Candida albicans Induces Metabolic Reprogramming in Human NK Cells and Responds to Perforin with a Zinc Depletion Response. Front Microbiol 7:750
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |PRA1 |ZRT1
Hernday AD, et al. (2016) Ssn6 Defines a New Level of Regulation of White-Opaque Switching in Candida albicans and Is Required For the Stochasticity of the Switch. MBio 7(1):e01565-15
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |EFG1 |SSN6 |WOR1 |WOR2
Ikeh MA, et al. (2016) Pho4 mediates phosphate acquisition in Candida albicans and is vital for stress resistance and metal homeostasis. Mol Biol Cell 27(17):2784-801
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |C3_00170C_A |C3_01540W_A |C3_02140C_A |C6_03320W_A |GDE1 |GIT1 |GIT2 |GIT3 |GPD2 |PHO100 |PHO112 |PHO113 |PHO4 |RHR2 |MORE
Jha A and Kumar A (2016) Development and targeting of transcriptional regulatory network controlling FLU1 activation in Candida albicans for novel antifungals. J Mol Graph Model 69:1-7
CGD Papers Entry  Pubmed Entry  
Computational analysisC. albicans |C1_10910C_A |C2_10230W_A |C6_02280W_A |CPH1 |CTA8 |CTF1 |CWT1 |EFG1 |EFH1 |FLU1 |GCN4 |GRF10 |HAL9 |HAP2 |MORE
Kakade P, et al. (2016) ZCF32, a fungus specific Zn(II)2 Cys6 transcription factor, is a repressor of the biofilm development in the human pathogen Candida albicans. Sci Rep 6:31124
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |ZCF32
Khandelwal NK, et al. (2016) Pleiotropic effects of the vacuolar ABC transporter MLT1 of Candida albicans on cell function and virulence. Biochem J 473(11):1537-52
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |MLT1
Leach MD, et al. (2016) Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodelling and chromatin architecture in Candida albicans. Nat Commun 7:11704
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic co-immunoprecipitation study, Genomic expression studyC. albicans |ALS1 |ALS3 |CTA8 |HSP90 |ROB1
Lee JA, et al. (2016) Functional Genomic Analysis of Candida albicans Adherence Reveals a Key Role for the Arp2/3 Complex in Cell Wall Remodelling and Biofilm Formation. PLoS Genet 12(11):e1006452
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale phenotype analysisC. albicans |ARC18 |ARP2 |C2_03930C_A |C3_00830C_A |C4_05340W_A |C5_00330C_A |HSL1 |MIH1 |MNN9 |PMT1 |RHO1 |RVS167 |SPC98 |SPT7 |MORE
Leger T, et al. (2016) The Metacaspase (Mca1p) Restricts O-glycosylation During Farnesol-induced Apoptosis in Candida albicans. Mol Cell Proteomics 15(7):2308-23
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |ATP1 |BGL2 |C3_03410C_A |CDC48 |ECM33 |IDH2 |MCA1 |SRB1 |TIM50 |UGP1
Lohse MB and Johnson AD (2016) Identification and Characterization of Wor4, a New Transcriptional Regulator of White-Opaque Switching. G3 (Bethesda) 6(3):721-9
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |WOR1 |WOR2 |WOR4
Luo T, et al. (2016) Immunoproteomic Analysis of Antibody Responses to Extracellular Proteins of Candida albicans Revealing the Importance of Glycosylation for Antigen Recognition. J Proteome Res 15(8):2394-406
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale protein localizationC. albicans |ASC1 |LIP4 |MET6 |PRX1 |SAP6 |TPI1 |TSA1 |TSA1B |XOG1
Martinez JP, et al. (2016) Null mutants of Candida albicans for cell-wall-related genes form fragile biofilms that display an almost identical extracellular matrix proteome. FEMS Yeast Res 16(7)
CGD Papers Entry  Pubmed Entry  Reference LINKOUT  Reference LINKOUT  
Large-scale protein localizationC. albicans |ACO1 |ADE8 |ADH1 |ADH2 |ADO1 |ALG5 |APT1 |C1_03510C_A |C1_12650C_A |C2_05550W_A |C2_07630C_A |C2_09600C_A |C3_06920W_A |C5_01230C_A |MORE
Merhej J, et al. (2016) A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata. Front Microbiol 7:645
CGD Papers Entry  Pubmed Entry  
Genomic co-immunoprecipitation study, Computational analysis, Genomic expression studyC. glabrata |AP1 |AP5 |CAD1 |YAP3 |YAP3b |YAP6 |YAP7
Nishikawa H, et al. (2016) Roles of vacuolar H+-ATPase in the oxidative stress response of Candida glabrata. FEMS Yeast Res 16(5)
CGD Papers Entry  Pubmed Entry  Reference LINKOUT  Reference LINKOUT  
Genomic expression studyC. glabrata |CAGL0A02530g |CAGL0A04433g |CAGL0B03289g |CAGL0C02035g |CAGL0C03850g |CAGL0D03432g |CAGL0E04356g |CAGL0G04213g |CAGL0G04961g |CAGL0G07271g |CAGL0I00242g |CAGL0I00264g |CAGL0I00506g |CAGL0I00924g |MORE
O'Meara TR, et al. (2016) Mapping the Hsp90 Genetic Network Reveals Ergosterol Biosynthesis and Phosphatidylinositol-4-Kinase Signaling as Core Circuitry Governing Cellular Stress. PLoS Genet 12(6):e1006142
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale genetic interactionC. albicans |ERG5 |HSP90 |SNT1 |STT4 |WAL1
Pais P, et al. (2016) Membrane Proteomics Analysis of the Candida glabrata Response to 5-Flucytosine: Unveiling the Role and Regulation of the Drug Efflux Transporters CgFlr1 and CgFlr2. Front Microbiol 7:2045
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. glabrata |AP1 |CAGL0A03278g |CAGL0C02695g |CAGL0E02013g |CAGL0E03201g |CAGL0E03938g |CAGL0F04213g |CAGL0G01078g |CAGL0G06138g |CAGL0I00792g |CAGL0J03234g |CAGL0K01859g |CAGL0K07414g |CAGL0L01485g |MORE
Rajendran R, et al. (2016) Integrating Candida albicans metabolism with biofilm heterogeneity by transcriptome mapping. Sci Rep 6:35436
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |AAT1 |ACC1 |ADH5 |XOG1
Serrano-Fujarte I, et al. (2016) Moonlight-like proteins of the cell wall protect sessile cells of Candida from oxidative stress. Microb Pathog 90:22-33
CGD Papers Entry  Pubmed Entry  Reference LINKOUT  
Large-scale protein detectionC. albicans |ACH1 |ADH1 |CTA1 |ENO1 |GND1 |TPI1
Simoes J, et al. (2016) The Fungus Candida albicans Tolerates Ambiguity at Multiple Codons. Front Microbiol 7:401
CGD Papers Entry  Pubmed Entry  
Other genomic analysisC. albicans |JAB1 |tA(UGC)3mt
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