Genome-wide Analysis papers

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Genome-wide AnalysisProteome-wide Analysis
Comparative genomic hybridizationLarge-scale protein detection
Computational analysisLarge-scale protein interaction
Genomic co-immunoprecipitation studyLarge-scale protein localization
Genomic expression studyLarge-scale protein modification
Large-scale genetic interactionOther large-scale proteomic analysis
Large-scale phenotype analysis 
Other genomic analysis 

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ReferenceLiterature TopicSpeciesGenes Addressed
Beekman CN, et al. (2021) Comparative genomics of white and opaque cell states supports an epigenetic mechanism of phenotypic switching in Candida albicans G3 (Bethesda) 11:jkab001
CGD Papers Entry  Pubmed Entry  
Genomic expression study
Bliss JM, et al. (2021) Transcription Profiles Associated with Inducible Adhesion in Candida parapsilosis mSphere 6:e01071-20
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Genomic expression studyC. parapsilosis |CPAR2_200650 |CPAR2_302140 |CPAR2_400510 |CPAR2_701230
Chew SY, et al. (2021) Transcriptomic and proteomic profiling revealed reprogramming of carbon metabolism in acetate-grown human pathogen Candida glabrata J Biomed Sci 28:1
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. glabrata |AAT1 |ACO1 |ADH2 |CAGL0H05137g |CAGL0J00451g |CIT1 |CTA1 |ENO1 |FBP1 |GCV1 |GPM1 |HXK2 |ICL1 |IDP2 |MORE
Fourie R, et al. (2021) Transcriptional response of Candida albicans to Pseudomonas aeruginosa in a polymicrobial biofilm G3 (Bethesda)
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Genomic expression studyC. albicans |ADH2 |ADH3 |ADH5 |C2_04480W_A |CAT1 |CSA1 |CTA4 |ECE1 |FDH3 |GAL4 |HWP1 |HYR1 |RBT1 |RBT4 |MORE
Goncalves B, et al. (2021) Revealing Candida glabrata biofilm matrix proteome: global characterization and pH response Biochem J
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Large-scale protein localizationC. glabrata |ACT1 |AED1 |AHP1 |ALD4 |ARG1 |ARO8 |ASC1 |ATH1 |ATP1 |ATP2 |AWP12 |AWP3 |AWP6 |BMH1(B) |MORE
Hunsaker EW, et al. (2021) Copper Availability Influences the Transcriptomic Response of Candida albicans to Fluconazole Stress G3 (Bethesda)
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Genomic expression studyC. albicans |ATX1 |CCC2 |CRD2 |CRP1 |CTR1 |CUP1 |FET3 |MAC1 |SOD6
Li P, et al. (2021) Proteomic Analysis of Caspofungin-Induced Responses in Planktonic Cells and Biofilms of Candida albicans Front Microbiol 12:639123
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Large-scale protein detectionC. albicans |LSP1 |PIL1
Mixao V, et al. (2021) Extreme diversification driven by parallel events of massive loss of heterozygosity in the hybrid lineage of Candida albicans Genetics 217:iyaa004
CGD Papers Entry  Pubmed Entry  
Other genomic analysis
Mukherjee S, et al. (2021) Exploring the druggable proteome of Candida species through comprehensive computational analysis Genomics
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Computational analysisC. albicans |ALT1 |ARG3 |ARG8 |ERG4 |HIS5 |LYS9
Mundodi V, et al. (2021) Global translational landscape of the Candida albicans morphological transition G3 (Bethesda) 11:jkaa043
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |ALG6 |BEM1 |C3_05990C_A |CEK1 |CHS7 |CTA2 |CWH8 |DDC1 |DDR48 |ECE1 |HMS1 |HWP1 |HXK1 |INO2 |MORE
Munoz JF, et al. (2021) Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris Genetics
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Other genomic analysisC. albicans |ERG11
C. auris |B9J08_000020 |B9J08_001049 |B9J08_001512 |B9J08_001533 |B9J08_001960 |B9J08_002580 |B9J08_004095 |B9J08_004119 |B9J08_004456 |B9J08_004881 |B9J08_004907 |B9J08_005531
O'Meara TR and O'Meara MJ (2021) DeORFanizing Candida albicans Genes using Coexpression mSphere 6:e01245-20
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Computational analysisC. albicans |CCJ1
Pal SE, et al. (2021) A Candida parapsilosis Overexpression Collection Reveals Genes Required for Pathogenesis J Fungi (Basel) 7:97
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Large-scale phenotype analysisC. parapsilosis |CPAR2_100540 |CPAR2_104420 |CPAR2_105250 |CPAR2_107020 |CPAR2_107240 |CPAR2_108840 |CPAR2_109520 |CPAR2_200040 |CPAR2_200390 |CPAR2_201920 |CPAR2_205060 |CPAR2_209240 |CPAR2_209520 |CPAR2_300080 |MORE
Singh-Babak SD, et al. (2021) Lineage-specific selection and the evolution of virulence in the Candida clade Proc Natl Acad Sci U S A 118:e2016818118
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Genomic expression studyC. albicans |CDC19 |ENO1 |FBA1 |GLK1 |GLK4 |GPM1 |HXK2 |PFK1 |PFK2 |PFK26 |PGI1 |PGK1 |TDH3 |TPI1
Sircaik S, et al. (2021) The protein kinase Ire1 impacts pathogenicity of Candida albicans by regulating homeostatic adaptation to endoplasmic reticulum stress Cell Microbiol
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Genomic expression studyC. albicans |IRE1
Vazquez-Fernandez P, et al. (2021) A comparative proteomic analysis of Candida species in response to the oxidizing agent cumene hydroperoxide Arch Microbiol
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Large-scale protein localization
Zheng H, et al. (2021) Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in Candida albicans mSystems 6:e01129-20
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Large-scale protein modificationC. albicans |RPL39 |RPL9B |RPS18 |RPS5
Zhou X, et al. (2021) Systematic Analysis of the Lysine Crotonylome and Multiple Posttranslational Modification Analysis (Acetylation, Succinylation, and Crotonylation) in Candida albicans mSystems 6:e01316-20
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Large-scale protein modificationC. albicans |C1_04180W_A |HHF1 |HHT1 |HHT21 |HTA1 |HTA2 |HTA3 |HTB1 |RPL10 |RPL10A |RPL12 |RPL13 |RPL15A |RPL3 |MORE
Alkafeef SS, et al. (2020) Proteomic profiling of the monothiol glutaredoxin Grx3 reveals its global role in the regulation of iron dependent processes. PLoS Genet 16(6):e1008881
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Large-scale protein interactionC. albicans |C1_07630W_A |GRX3 |HAP43 |SFU1
Alves R, et al. (2020) Transcriptional responses of Candida glabrata biofilm cells to fluconazole are modulated by the carbon source. NPJ Biofilms Microbiomes 6:4
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. glabrata |CAGL0F08239g |CAGL0J07980g |CAGL0K10274g |ERG11 |ERG9 |FTR1 |MGE1
Balachandra VK, et al. (2020) The RSC (Remodels the Structure of Chromatin) complex of Candida albicans shows compositional divergence with distinct roles in regulating pathogenic traits PLoS Genet
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |ARP7 |ARP9 |NPL6 |NRI1 |NRI2 |RSC2 |RSC4 |RSC58 |RSC8 |RSC9 |SFH1 |SNF12 |STH1
Caplan T, et al. (2020) Overcoming Fungal Echinocandin Resistance through Inhibition of the Non-essential Stress Kinase Yck2. Cell Chem Biol
CGD Papers Entry  Pubmed Entry  
Large-scale phenotype analysisC. albicans |ALS3 |CHS1 |CHS2 |CHS3 |CHS8 |DDR48 |HRR25 |SOD5 |STP4 |URK1 |YCK2
Cheng R, et al. (2020) Characterization of the transcriptional response of Candida parapsilosis to the antifungal peptide MAF-1A PeerJ 8:e9767
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. parapsilosis |CPAR2_203780 |CPAR2_208190 |CPAR2_213060 |CPAR2_404910 |CPAR2_700300 |CPAR2_702930 |CPAR2_800950 |CPAR2_807700 |CPAR2_807710 |LIP2
Dawson CS, et al. (2020) Protein markers for Candida albicans EVs include claudin-like Sur7 family proteins. J Extracell Vesicles 9(1):1750810
CGD Papers Entry  Pubmed Entry  
Large-scale protein localizationC. albicans |ARF3 |BGL2 |BRO1 |C1_04200C_A |C2_08160C_A |C4_04800W_A |CAN1 |CAN2 |CDC42 |CDR1 |CDR2 |CHS3 |CRH11 |ECM33 |MORE
Delarze E, et al. (2020) Identification and Characterization of Mediators of Fluconazole Tolerance in Candida albicans Front Microbiol 11:591140
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Genomic expression study, Large-scale phenotype analysisC. albicans |ASF1 |CKA1 |CPH1 |CRZ1 |CSC25 |CSK1 |ESP1 |GZF3 |KNS1 |KRE1 |LCB4 |MBF1 |PGA28 |PGA42 |MORE
Doing G, et al. (2020) Conditional antagonism in co-cultures of Pseudomonas aeruginosa and Candida albicans: An intersection of ethanol and phosphate signaling distilled from dual-seq transcriptomics. PLoS Genet 16(8):e1008783
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Genomic expression studyC. albicans |ADH1 |PHO4
Ev LD, et al. (2020) The role of Candida albicans in root caries biofilms: an RNA-seq analysis. J Appl Oral Sci 28:e20190578
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |ASR1 |C3_01020W_A |C7_03850W_A |GUT1 |HGT19 |ITR1 |STT4 |UTP20
Fan S, et al. (2020) Discovery of the Diploid Form of the Emerging Fungal Pathogen Candida auris ACS Infect Dis 6(10):2641-2646
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. auris |B9J08_000020 |B9J08_002513 |B9J08_004914
Feng J, et al. (2020) Hof1 plays a checkpoint related role in MMS induced DNA damage response in Candida albicans. Mol Biol Cell :mbcE19060316
CGD Papers Entry  Pubmed Entry  
Large-scale phenotype analysisC. albicans |HOF1 |NOC2 |RAD23 |RAD4 |RAD53
Goncalves B, et al. (2020) Effect of progesterone on Candida albicans biofilm formation under acidic conditions: A transcriptomic analysis. Int J Med Microbiol :151414
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |ADH2 |AGP3 |AHR1 |ALS1 |ALS5 |ATO1 |ATP6 |ATP9 |BRG1 |C1_00160C_A |C1_01130W_A |C1_01630W_A |C1_07160C_A |C1_13130C_A |MORE
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