| Reference | Literature Topic | Species | Genes Addressed |
|---|
Barber AE, et al. (2019) Comparative Genomics of Serial Candida glabrata Isolates and the Rapid Acquisition of Echinocandin Resistance during Therapy. Antimicrob Agents Chemother 63(2)
    | Other genomic analysis | C. glabrata | |FKS2 |FPR1 |MDE1 |
Bravo Ruiz G, et al. (2019) Rapid and extensive karyotype diversification in haploid clinical Candida auris isolates. Curr Genet 65(5):1217-1228
| Other genomic analysis |
Carrete L, et al. (2019) Genome Comparisons of Candida glabrata Serial Clinical Isolates Reveal Patterns of Genetic Variation in Infecting Clonal Populations. Front Microbiol 10:112
| Other genomic analysis | C. albicans | |CDR1 |CDR2 |ERG11 |ERG3 |ERG9 |FEN1 |GSL2 |QDR2 |SNQ2 |
| | C. glabrata | |CAGL0B00242g |CAGL0F09273g |CAGL0J01774g |CAGL0J02530g |CAGL0L00227g |CAGL0M08756g |CDR1 |ERG11 |ERG3 |ERG9 |FEN1 |FKS1 |FKS2 |FLR1 |MORE |
Castanheira M, et al. (2019) Analysis of Global Antifungal Surveillance Results Reveals Predominance of Erg11 Y132F Alteration among Azole-Resistant Candida parapsilosis and Candida tropicalis and Country-Specific Isolate Dissemination. Int J Antimicrob Agents
| Other genomic analysis | C. albicans | |CDR1 |ERG11 |MDR1 |
| | C. glabrata | |CDR1 |ERG11 |
| | C. dubliniensis | |CDR1 |Cd36_84000 |ERG11 |MDR1 |
| | C. parapsilosis | |CDR1 |ERG11 |MDR1 |
Chinnici J, et al. (2019) Candida albicans cell wall integrity transcription factors regulate polymicrobial biofilm formation with Streptococcus gordonii. PeerJ 7:e7870
| Large-scale protein detection | C. albicans | |ACE2 |ASH1 |BAS1 |BCR1 |BRG1 |CAS5 |CPH2 |CRZ1 |CSR1 |CTA4 |CUP9 |CWT1 |CZF1 |EFG1 |MORE |
Cottier F, et al. (2019) Remasking of Candida albicans beta-Glucan in Response to Environmental pH Is Regulated by Quorum Sensing. MBio 10(5)
| Genomic expression study | C. albicans | |CHT2 |EFG1 |
Das S, et al. (2019) Network analysis of hyphae forming proteins in Candida albicans identifies important proteins responsible for pathovirulence in the organism. Heliyon 5(6):e01916
| Computational analysis | C. albicans | |ACT1 |BEM1 |CDC10 |CDC11 |CDC24 |CDC28 |CDC42 |CLA4 |CLN3 |CYR1 |HGC1 |HOG1 |HSP90 |PBS2 |MORE |
Duvenage L, et al. (2019) Inhibition of Classical and Alternative Modes of Respiration in Candida albicans Leads to Cell Wall Remodeling and Increased Macrophage Recognition. MBio 10(1)
| Genomic expression study | C. albicans | |AOX1 |AOX2 |FBP1 |GPM1 |GPM2 |ICL1 |MLS1 |PCK1 |PGI1 |PGK1 |UPC2 |YHB1 |
El Khoury P, et al. (2019) Phenotypic and Cell Wall Proteomic Characterization of a DDR48 mutant Candida albicans Strain. J Microbiol Biotechnol
| Large-scale protein detection | C. albicans | |ALS3 |CR_01020C_A |DDR48 |ECE1 |HSP90 |HYR4 |IPP1 |PGA4 |PMT1 |PRA1 |RIM9 |SOD4 |SOD6 |UTR2 |
Guo X, et al. (2019) Understand the genomic diversity and evolution of fungal pathogen Candida glabrata by genome-wide analysis of genetic variations. Methods
| Computational analysis | C. glabrata | |CST6 |EPA10 |EPA9 |
Huang MY, et al. (2019) Circuit diversification in a biofilm regulatory network. PLoS Pathog 15(5):e1007787
| Genomic expression study | C. albicans | |BCR1 |BRG1 |EFG1 |UME6 |
Islam A, et al. (2019) Mms21: A Putative SUMO E3 Ligase in Candida albicans That Negatively Regulates Invasiveness and Filamentation, and Is Required for the Genotoxic and Cellular Stress Response. Genetics 211(2):579-595
| Genomic expression study | C. albicans | |ALS1 |ALS3 |BUB3 |DAP1 |ECE1 |EFG1 |HGC1 |HNT2 |HWP1 |MMS21 |PGA13 |PGA26 |RAD2 |SOD4 |MORE |
Jakab A, et al. (2019) Physiological and Transcriptional Responses of Candida parapsilosis to Exogenous Tyrosol. Appl Environ Microbiol 85(20)
| Genomic expression study | C. parapsilosis | |CDR1 |FAD2 |FAD3 |MDR1 |
| | C. albicans | |CDR1 |FAD2 |FAD3 |MDR1 |
Karkowska-Kuleta J, et al. (2019) Moonlighting proteins are variably exposed at the cell surfaces of Candida glabrata, Candida parapsilosis and Candida tropicalis under certain growth conditions. BMC Microbiol 19(1):149
| Large-scale protein detection | C. albicans | |ENO1 |PDC11 |TDH3 |
| | C. glabrata | |ADH1 |AHP1 |BAT2 |CAGL0H06633g |CAGL0K03289g |ENO1 |FBA1 |GND1 |GPM1 |IPP1 |PDC |PGI1 |PGK1 |PMU1 |MORE |
| | C. parapsilosis | |ADH1 |ALD5 |CPAR2_101620 |CPAR2_202600 |CPAR2_207210 |CPAR2_211810 |CPAR2_401230 |CPAR2_602950 |CPAR2_807980 |CPAR2_808670 |GND1 |ILV5 |PDC11 |PGI1 |
Konecna K, et al. (2019) A comparative analysis of protein virulence factors released via extracellular vesicles in two Candida albicans strains cultivated in a nutrient-limited medium. Microb Pathog 136:103666
| Large-scale protein localization | C. albicans | |ALS2 |ALS3 |ALS4 |ASC1 |ATC1 |BGL2 |BMH1 |CRH11 |ECM33 |ENO1 |FET34 |HEX1 |HSP90 |MP65 |MORE |
Lee SY, et al. (2019) The Transcription Factor Sfp1 Regulates the Oxidative Stress Response in Candida albicans. Microorganisms 7(5)
| Genomic expression study | C. albicans | |CAP1 |HOG1 |SFP1 |
Liao Z, et al. (2019) Metabonomics on Candida albicans indicate the excessive H3K56ac is involved in the antifungal activity of Shikonin. Emerg Microbes Infect 8(1):1243-1253
| Other large-scale proteomic analysis | C. albicans | |HST3 |
Lombardi L, et al. (2019) Characterization of the Candida orthopsilosis agglutinin-like sequence (ALS) genes. PLoS One 14(4):e0215912
| Computational analysis |
McCarthy CGP and Fitzpatrick DA (2019) Pan-genome analyses of model fungal species. Microb Genom 5(2)
| Other genomic analysis |
O'Meara TR, et al. (2019) Global proteomic analyses define an environmentally contingent Hsp90 interactome and reveal chaperone-dependent regulation of stress granule proteins and the R2TP complex in a fungal pathogen. PLoS Biol 17(7):e3000358
| Large-scale protein interaction | C. albicans | |AHA1 |C3_00950C_A |CDC37 |CNS1 |CPR6 |HCH1 |HSP90 |RVB1 |RVB2 |SBA1 |SGT1 |STI1 |
Pais P, et al. (2019) Draft Genome Sequences of Three Clinical Isolates of the Pathogenic Yeast Candida glabrata. Microbiol Resour Announc 8(35)
| Other genomic analysis |
Romo JA, et al. (2019) Global Transcriptomic Analysis of the Candida albicans Response to Treatment with a Novel Inhibitor of Filamentation. mSphere 4(5)
| Genomic expression study | C. albicans | |ALS3 |ECE1 |SAP5 |
Schoeters F and Van Dijck P (2019) Protein-Protein Interactions in Candida albicans. Front Microbiol 10:1792
| Large-scale protein interaction |
Sellam A, et al. (2019) The p38/HOG stress-activated protein kinase network couples growth to division in Candida albicans. PLoS Genet 15(3):e1008052
| Large-scale phenotype analysis | C. albicans | |ACE2 |AHR1 |ARO80 |ASG1 |ASH1 |BAS1 |BCR1 |C2_01870C_A |C2_05640W_A |C2_06600W_A |C2_08860W_A |C2_10540W_A |C2_10700C_A |C4_05870C_A |MORE |
Shivarathri R, et al. (2019) The Fungal Histone Acetyl Transferase Gcn5 Controls Virulence of the Human Pathogen Candida albicans through Multiple Pathways. Sci Rep 9(1):9445
| Genomic expression study | C. albicans | |CEK1 |EFG1 |GCN5 |GSC1 |GSL1 |HOG1 |MKC1 |
Spettel K, et al. (2019) Analysis of antifungal resistance genes in Candida albicans and Candida glabrata using next generation sequencing. PLoS One 14(1):e0210397
| Large-scale phenotype analysis | C. albicans | |CDR1 |ERG11 |ERG3 |GSC1 |GSL1 |GSL2 |TAC1 |
| | C. glabrata | |CDR1 |ERG11 |ERG3 |FKS1 |FKS2 |
Wang FJ and Liu ZH (2019) Systematic analysis of protein expression in Candida albicans exposed to farnesol. Chin Med J (Engl) 132(19):2348-2353
| Large-scale protein detection | C. albicans | |ERG1 |ERG24 |ERG25 |ERG26 |ERG27 |ERG3 |ERG4 |ERG5 |ERG6 |
Yeh SJ, et al. (2019) Investigating Common Pathogenic Mechanisms between Homo sapiens and Different Strains of Candida albicans for Drug Design: Systems Biology Approach via Two-Sided NGS Data Identification. Toxins (Basel) 11(2)
| Computational analysis | C. albicans | |FLO8 |HHF22 |NAM7 |SAP5 |SAP6 |SAS2 |SUV3 |YBP1 |
Allert S, et al. (2018) Candida albicans-Induced Epithelial Damage Mediates Translocation through Intestinal Barriers. MBio 9(3)
| Large-scale phenotype analysis | C. albicans | |AAF1 |ALS3 |BAS1 |C1_01490W_A |C1_07480C_A |CPH1 |DEF1 |ECE1 |HGC1 |HMA1 |KEX1 |NPR2 |PEP12 |SAP1 |MORE |
Awad A, et al. (2018) Proteomic analysis of a Candida albicans pga1 Null Strain. EuPA Open Proteom 18:1-6
| Large-scale protein detection | C. albicans | |APE2 |CDC11 |CDR1 |CDR2 |CFL1 |CR_03530W_A |EGD2 |ERG1 |ERG11 |EXG2 |HSP70 |HSP90 |INT1 |LIP10 |MORE |
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