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Genome-wide Analysis papers

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Click on a topic to see a list of all papers associated with that topic:

Genome-wide AnalysisProteome-wide Analysis
Comparative genomic hybridizationLarge-scale protein detection
Computational analysisLarge-scale protein interaction
Genomic co-immunoprecipitation studyLarge-scale protein localization
Genomic expression studyLarge-scale protein modification
Large-scale genetic interactionOther large-scale proteomic analysis
Large-scale phenotype analysis 
Other genomic analysis 

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ReferenceLiterature TopicSpeciesGenes Addressed
Barber AE, et al. (2019) Comparative Genomics of Serial Candida glabrata Isolates and the Rapid Acquisition of Echinocandin Resistance during Therapy. Antimicrob Agents Chemother 63(2)
CGD Papers Entry  Pubmed Entry  
Other genomic analysisC. glabrata |FKS2 |FPR1 |MDE1
Duvenage L, et al. (2019) Inhibition of Classical and Alternative Modes of Respiration in Candida albicans Leads to Cell Wall Remodeling and Increased Macrophage Recognition. MBio 10(1)
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |AOX1 |AOX2 |FBP1 |GPM1 |GPM2 |ICL1 |MLS1 |PCK1 |PGI1 |PGK1 |UPC2 |YHB1
Islam A, et al. (2019) Mms21: A Putative SUMO E3 Ligase in Candida albicans That Negatively Regulates Invasiveness and Filamentation, and Is Required for the Genotoxic and Cellular Stress Response. Genetics 211(2):579-595
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |ALS1 |ALS3 |BUB3 |DAP1 |ECE1 |EFG1 |HGC1 |HNT2 |HWP1 |MMS21 |PGA13 |PGA26 |RAD2 |SOD4 |MORE
McCarthy CGP and Fitzpatrick DA (2019) Pan-genome analyses of model fungal species. Microb Genom 5(2)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Other genomic analysis
Spettel K, et al. (2019) Analysis of antifungal resistance genes in Candida albicans and Candida glabrata using next generation sequencing. PLoS One 14(1):e0210397
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale phenotype analysisC. glabrata |CDR1 |ERG11 |ERG3 |FKS1 |FKS2
C. albicans |CDR1 |ERG11 |ERG3 |GSC1 |GSL1 |GSL2 |TAC1
Allert S, et al. (2018) Candida albicans-Induced Epithelial Damage Mediates Translocation through Intestinal Barriers. MBio 9(3)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale phenotype analysisC. albicans |AAF1 |ALS3 |BAS1 |C1_01490W_A |C1_07480C_A |CPH1 |DEF1 |ECE1 |HGC1 |HMA1 |KEX1 |NPR2 |PEP12 |SAP1 |MORE
Awad A, et al. (2018) Proteomic analysis of a Candida albicans pga1 Null Strain. EuPA Open Proteom 18:1-6
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |APE2 |CDC11 |CDR1 |CDR2 |CFL1 |CR_03530W_A |EGD2 |ERG1 |ERG11 |EXG2 |HSP70 |HSP90 |INT1 |LIP10 |MORE
Awad A, et al. (2018) Tandem Mass Spectrometric Cell Wall Proteome Profiling of a Candida albicans hwp2 Mutant Strain. Curr Mol Pharmacol 11(3):211-225
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |CHT2 |HWP2 |MTS1 |PGA28 |PGA32 |PGA41 |PGA50 |PHR1 |RBR1 |SAP10 |SAP4 |SAP5
Biswas C, et al. (2018) Whole Genome Sequencing of Australian Candida glabrata Isolates Reveals Genetic Diversity and Novel Sequence Types. Front Microbiol 9:2946
CGD Papers Entry  Pubmed Entry  
Other genomic analysisC. glabrata |FKS1 |FKS2 |MSH2 |PDR1
Caplan T, et al. (2018) Functional Genomic Screening Reveals Core Modulators of Echinocandin Stress Responses in Candida albicans. Cell Rep 23(8):2292-2298
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale phenotype analysisC. albicans |AHR1 |BCK1 |C6_00530C_A |CAS5 |CAT1 |CCT8 |DBP8 |GSC1 |GSL1 |HSP90 |KEX2 |MKC1 |NOP14 |PKC1 |MORE
Chen Y, et al. (2018) Chemogenomic Profiling of the Fungal Pathogen Candida albicans. Antimicrob Agents Chemother 62(2)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale phenotype analysisC. albicans |ADP1 |AGM1 |ALO1 |C1_07050C_A |C1_10320W_A |C1_14500C_A |C2_05290C_A |C3_03110W_A |C4_00470C_A |C4_04870C_A |C5_00560W_A |C6_00430C_A |C6_02410W_A |CHS7 |MORE
El Khoury P, et al. (2018) Proteomic analysis of a Candida albicans pir32 null strain reveals proteins involved in adhesion, filamentation and virulence. PLoS One 13(3):e0194403
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale protein detectionC. albicans |ALS3 |CDC42 |CSA2 |DCW1 |DFG5 |PIR32 |RBT5 |SSR1 |SSU81 |UCF1 |XOG1
Forche A, et al. (2018) Rapid Phenotypic and Genotypic Diversification After Exposure to the Oral Host Niche in Candida albicans. Genetics 209(3):725-741
CGD Papers Entry  Pubmed Entry  
Other genomic analysisC. albicans |GAL1
Herrero-de-Dios C, et al. (2018) Redox Regulation, Rather than Stress-Induced Phosphorylation, of a Hog1 Mitogen-Activated Protein Kinase Modulates Its Nitrosative-Stress-Specific Outputs. MBio 9(2)
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |HOG1
Huang M and Kao KC (2018) Identifying novel genetic determinants for oxidative stress tolerance in Candida glabrata via adaptive laboratory evolution. Yeast 35(11):605-618
CGD Papers Entry  Pubmed Entry  
Large-scale phenotype analysisC. glabrata |CAGL0C00385g |CAGL0F06831g |CTH2
Iracane E, et al. (2018) Identification of an Exceptionally Long Intron in the HAC1 Gene of Candida parapsilosis. mSphere 3(6)
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |HAC1
C. glabrata |HAC1
C. parapsilosis |HAC1
Jiang L, et al. (2018) CaGdt1 plays a compensatory role for the calcium pump CaPmr1 in the regulation of calcium signaling and cell wall integrity signaling in Candida albicans. Cell Commun Signal 16(1):33
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |C5_05020C_A |CEK1 |CHS2 |CHS3 |CHS8 |DIE2 |GDT1 |MKC1 |PMR1 |PMT1 |PMT4 |STT3 |SWI4
Kaneva IN, et al. (2018) Quantitative Proteomic Analysis in Candida albicans Using SILAC-Based Mass Spectrometry. Proteomics 18(5-6):e1700278
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |ARG4 |CDC14
Lee JH, et al. (2018) Antibiofilm and Antivirulence Activities of 6-Gingerol and 6-Shogaol Against Candida albicans Due to Hyphal Inhibition. Front Cell Infect Microbiol 8:299
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |CDR1 |CDR2 |ECE1 |HWP1 |RTA3
McCall AD, et al. (2018) Candida albicans Sfl1/Sfl2 regulatory network drives the formation of pathogenic microcolonies. PLoS Pathog 14(9):e1007316
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |ECE1 |HWP1 |HYR1 |IHD1 |NDT80 |PGA10 |PLB1 |ROB1 |SAP5 |SFL1 |SFL2
Mount HO, et al. (2018) Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs. PLoS Genet 14(4):e1007319
CGD Papers Entry  Pubmed Entry  
Large-scale genetic interaction, Large-scale phenotype analysisC. albicans |APM1 |CR_03430W_A |ERG3 |ERG5 |GZF3 |KIC1 |MRR2 |NPR2 |PBS2 |PEP8 |RCY1 |RGD1 |SET6 |SSK2 |MORE
Nair R, et al. (2018) Identification of genome-wide binding sites of heat shock factor 1, Hsf1, under basal conditions in the human pathogenic yeast, Candida albicans. AMB Express 8(1):116
CGD Papers Entry  Pubmed Entry  
Genomic co-immunoprecipitation studyC. albicans |CTA8
O'Meara TR, et al. (2018) High-Throughput Screening Identifies Genes Required for Candida albicans Induction of Macrophage Pyroptosis. MBio 9(4)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale phenotype analysisC. albicans |HOG1 |MNN2 |MNN21 |MNN22 |MNN23 |MNN24 |MNN26 |PGA52
Schoeters F, et al. (2018) A High-Throughput Candida albicans Two-Hybrid System. mSphere 3(4)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale protein interactionC. albicans |PCL5 |PCL7 |PHO85
Segal ES, et al. (2018) Gene Essentiality Analyzed by In Vivo Transposon Mutagenesis and Machine Learning in a Stable Haploid Isolate of Candida albicans. MBio 9(5)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Large-scale phenotype analysisC. albicans |ASK1 |C1_12660W_A |C1_12810W_A |C2_06230W_A |C6_04120C_A |C7_02460C_A |CDC11 |CDC12 |CDC3 |CLN3 |CR_03740C_A |CR_05100W_A |FAD1 |KRR1 |MORE
Thakre A, et al. (2018) Limonene inhibits Candida albicans growth by inducing apoptosis. Med Mycol 56(5):565-578
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |C6_02480W_A |CCT8 |CRN1 |CR_04650W_A |EBP1 |KRE6 |MBF1 |NPL3 |PIL1 |PIN3 |RHR2 |RPL11 |RPL15A |RPL29 |MORE
Tripathi H and Khan F (2018) Identification of potential inhibitors against nuclear Dam1 complex subunit Ask1 of Candida albicans using virtual screening and MD simulations. Comput Biol Chem 72:33-44
CGD Papers Entry  Pubmed Entry  
Computational analysisC. albicans |ASK1 |DAM1
Tucey TM, et al. (2018) Glucose Homeostasis Is Important for Immune Cell Viability during Candida Challenge and Host Survival of Systemic Fungal Infection. Cell Metab 27(5):988-1006.e7
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |GAL4 |TYE7
Turner SA, et al. (2018) Dal81 Regulates Expression of Arginine Metabolism Genes in Candida parapsilosis. mSphere 3(2)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. parapsilosis |DAL81 |GAT1 |GCN4 |GZF3 |PUT3 |UGA3
Uppuluri P, et al. (2018) Candida albicans Dispersed Cells Are Developmentally Distinct from Biofilm and Planktonic Cells. MBio 9(4)
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |ACE2 |ARO2 |ARO3 |ARO4 |ARO8 |ARO9 |ASC1 |CDC5 |CHA1 |CHS1 |CHS2 |CHS8 |CHT1 |CHT2 |MORE
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