Genome-wide Analysis papers

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Genome-wide AnalysisProteome-wide Analysis
Comparative genomic hybridizationLarge-scale protein detection
Computational analysisLarge-scale protein interaction
Genomic co-immunoprecipitation studyLarge-scale protein localization
Genomic expression studyLarge-scale protein modification
Large-scale genetic interactionOther large-scale proteomic analysis
Large-scale phenotype analysis 
Other genomic analysis 

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ReferenceLiterature TopicSpeciesGenes Addressed
Basso V, et al. (2017) The two-component response regulator Skn7 belongs to a network of transcription factors regulating morphogenesis in Candida albicans and independently limits morphogenesis-induced ROS accumulation. Mol Microbiol 106(1):157-182
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |CPH1 |EFG1 |SKN7 |UME6
Bernardo RT, et al. (2017) The CgHaa1-Regulon Mediates Response and Tolerance to Acetic Acid Stress in the Human Pathogen Candida glabrata. G3 (Bethesda) 7(1):1-18
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. glabrata |CAGL0E03740g |CAGL0G05632g |FPS1 |FPS2 |HAA1 |PMA1 |RSB1 |SSA3 |TPO3 |YPS4
Cao C, et al. (2017) Global regulatory roles of the cAMP/PKA pathway revealed by phenotypic, transcriptomic and phosphoproteomic analyses in a null mutant of the PKA catalytic subunit in Candida albicans. Mol Microbiol 105(1):46-64
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Genomic expression studyC. albicans |AGP2 |ALS3 |ALS4 |AOX2 |BRG1 |CAN1 |CAT1 |CCP1 |CPH1 |CSA2 |CYR1 |DIP5 |ECE1 |ERG13 |MORE
Chaillot J, et al. (2017) Genome-Wide Screen for Haploinsufficient Cell Size Genes in the Opportunistic Yeast Candida albicans. G3 (Bethesda) 7(2):355-360
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Large-scale phenotype analysisC. albicans |ABD1 |ADE6 |AFT2 |AGM1 |AHR1 |ALI1 |ALK6 |ALK8 |ALO1 |ALT1 |APS3 |ARC19 |ARF3 |ARO3 |MORE
Chebaro Y, et al. (2017) Adaptation of Candida albicans to Reactive Sulfur Species. Genetics 206(1):151-162
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Genomic expression studyC. albicans |CTA4 |ECM17 |MET16 |SSU1 |ZCF2
Cottier F, et al. (2017) The Transcriptional Response of Candida albicans to Weak Organic Acids, Carbon Source, and MIG1 Inactivation Unveils a Role for HGT16 in Mediating the Fungistatic Effect of Acetic Acid. G3 (Bethesda) 7(11):3597-3604
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |HGT16 |MIG1
Dorsaz S, et al. (2017) Identification and Mode of Action of a Plant Natural Product Targeting Human Fungal Pathogens. Antimicrob Agents Chemother 61(9)
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Genomic expression studyC. albicans |ERG4 |ERG6
Leach MD, et al. (2017) Candida albicans Is Resistant to Polyglutamine Aggregation and Toxicity. G3 (Bethesda) 7(1):95-108
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Other large-scale proteomic analysisC. albicans |SGT2 |SIS1
Li DD, et al. (2017) Potent In Vitro Synergism of Fluconazole and Osthole against Fluconazole-Resistant Candida albicans. Antimicrob Agents Chemother 61(8)
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Genomic expression studyC. albicans |CAS5 |CAT1 |ECM17 |HGT6 |MAS2 |MDR1 |NAG3 |OGG1 |PDX3 |PTR2
Markus B, et al. (2017) Proteomic analysis of protein phosphatase Z1 from Candida albicans. PLoS One 12(8):e0183176
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Large-scale protein modificationC. albicans |EFT2 |PPZ1 |RPP0
Nocedal I, et al. (2017) Gene regulatory network plasticity predates a switch in function of a conserved transcription regulator. Elife 6
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Genomic expression studyC. albicans |NDT80
Nunez-Beltran A, et al. (2017) Identification of proteins involved in the adhesionof Candida species to different medical devices. Microb Pathog 107:293-303
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Large-scale protein localizationC. parapsilosis |CPAR2_207210 |CPAR2_602950
C. albicans |ENO1 |FBA1 |PGK1
C. glabrata |ENO1 |FBA1
Rybak JM, et al. (2017) Loss of C-5 Sterol Desaturase Activity Results in Increased Resistance to Azole and Echinocandin Antifungals in a Clinical Isolate of Candida parapsilosis. Antimicrob Agents Chemother 61(9)
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Genomic expression studyC. albicans |ERG11 |ERG2 |ERG24 |ERG25 |ERG3 |ERG5 |ERG6 |UPC2
C. parapsilosis |ERG11 |ERG2 |ERG25 |ERG3 |ERG6 |UPC2
Srivastava A, et al. (2017) Distinct roles of the 7-transmembrane receptor protein Rta3 in regulating the asymmetric distribution of phosphatidylcholine across the plasma membrane and biofilm formation in Candida albicans. Cell Microbiol 19(12)
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Genomic expression studyC. albicans |BCR1 |RTA3
Tao L, et al. (2017) Integration of the tricarboxylic acid (TCA) cycle with cAMP signaling and Sfl2 pathways in the regulation of CO2 sensing and hyphal development in Candida albicans. PLoS Genet 13(8):e1006949
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Genomic expression studyC. albicans |EFG1 |RAS1 |SFL2 |TPK1 |TPK2
Uppuluri P, et al. (2017) Transcriptional Profiling of C. albicans in a Two Species Biofilm with Rothia dentocariosa. Front Cell Infect Microbiol 7:311
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Genomic expression studyC. albicans |ALS3
Wangsanut T, et al. (2017) Grf10 and Bas1 Regulate Transcription of Adenylate and One-Carbon Biosynthesis Genes and Affect Virulence in the Human Fungal Pathogen Candida albicans. mSphere 2(4)
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Genomic expression studyC. albicans |BAS1 |GRF10
Xie JL, et al. (2017) The Candida albicans transcription factor Cas5 couples stress responses, drug resistance and cell cycle regulation. Nat Commun 8(1):499
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Genomic expression studyC. albicans |CAS5 |GLC7 |SWI4 |SWI6
Yang J, et al. (2017) Screening of potential genes contributing to the macrocycle drug resistance of C. albicans via microarray analysis. Mol Med Rep 16(5):7527-7533
CGD Papers Entry  Pubmed Entry  
Computational analysisC. albicans |ELP3 |GIS2 |MRT4 |NOP13 |NOP4 |NOP5 |PRP5 |RCL1 |URA3
de Barros PP, et al. (2017) Temporal Profile of Biofilm Formation, Gene Expression and Virulence Analysis in Candida albicans Strains. Mycopathologia 182(3-4):285-295
CGD Papers Entry  Pubmed Entry  
Genomic expression studyC. albicans |ALS1 |ALS3 |BCR1 |EFG1 |HWP1 |LIP9 |PLB2 |SAP5 |TEC1
Ansari MA, et al. (2016) Anticandidal Effect and Mechanisms of Monoterpenoid, Perillyl Alcohol against Candida albicans. PLoS One 11(9):e0162465
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Genomic expression studyC. albicans |CLB4 |CNB1 |CSM3 |DOT5 |GLN3 |HWP1 |KRE62 |RAD57 |RFX2 |SKO1 |SPC98 |TPK1 |VCX1
Ansari MA, et al. (2016) Mechanistic insights into the mode of action of anticandidal sesamol. Microb Pathog 98:140-8
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Genomic expression studyC. albicans |ASH2 |BZZ1 |C1_14240W_A |C3_03830W_A |C4_06800W_A |CDC14 |CR_06960W_A |CSM3 |DLH1 |DUT1 |FTR2 |KAR5 |MSH6 |PCL7 |MORE
Bohm L, et al. (2016) A Candida albicans regulator of disseminated infection operates primarily as a repressor and governs cell surface remodeling. Mol Microbiol 100(2):328-44
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Genomic expression studyC. albicans |ZCF21
Cabezon V, et al. (2016) Apoptosis of Candida albicans during the Interaction with Murine Macrophages: Proteomics and Cell-Death Marker Monitoring. J Proteome Res 15(5):1418-34
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |CDC48 |FBA1 |GPM1 |MCA1 |PMM1 |RCT1 |SSB1 |TAL1
Degani G, et al. (2016) Genomic and functional analyses unveil the response to hyphal wall stress in Candida albicans cells lacking beta(1,3)-glucan remodeling. BMC Genomics 17:482
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Genomic expression studyC. albicans |C1_04940C_A |CCN1 |CDC28 |CHS2 |CHS3 |CHS7 |CHS8 |CPP1 |CRH11 |CWH8 |DUN1 |ECM331 |FLC2 |GIN4 |MORE
Dutton LC, et al. (2016) Transcriptional landscape of trans-kingdom communication between Candida albicans and Streptococcus gordonii. Mol Oral Microbiol 31(2):136-61
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Genomic expression studyC. albicans |ALS1 |ARG1 |ARG3 |ARG4 |CAT1 |CEK1 |CIP1 |CPA2 |DFG5 |FGR42 |GLR1 |HSP21 |HYR1 |PGA34 |MORE
Fiorini A, et al. (2016) Candida albicans PROTEIN PROFILE CHANGES IN RESPONSE TO THE BUTANOLIC EXTRACT OF Sapindus saponariaL. Rev Inst Med Trop Sao Paulo 58:25
CGD Papers Entry  Pubmed Entry  
Large-scale protein detectionC. albicans |ASC1 |ENO1 |FBA1 |GPM1 |ILV5 |PDC11
Gerwien F, et al. (2016) A Novel Hybrid Iron Regulation Network Combines Features from Pathogenic and Nonpathogenic Yeasts. MBio 7(5)
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Genomic expression studyC. glabrata |ACO1 |AFT1 |ALG5 |ANP1 |ARB1 |ARG81 |ASK10 |ATM1 |BCK1 |BCY1 |BIG1 |CBK1 |CCC1 |CCH1 |MORE
Hebecker B, et al. (2016) Dual-species transcriptional profiling during systemic candidiasis reveals organ-specific host-pathogen interactions. Sci Rep 6:36055
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Genomic expression studyC. albicans |ALS1 |ALS3 |ECE1 |HSP104 |HSP90 |HWP1 |HYR1 |RHR2 |SOD5
Hellwig D, et al. (2016) Candida albicans Induces Metabolic Reprogramming in Human NK Cells and Responds to Perforin with a Zinc Depletion Response. Front Microbiol 7:750
CGD Papers Entry  Pubmed Entry  Web Supplement  Data  
Genomic expression studyC. albicans |PRA1 |ZRT1
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