| Reference | Literature Topic | Species | Genes Addressed |
|---|
Alqahtani FM, et al. (2021) Combining Genome-Wide Gene Expression Analysis (RNA-seq) and a Gene Editing Platform (CRISPR-Cas9) to Uncover the Selectively Pro-oxidant Activity of Aurone Compounds Against Candida albicans Front Microbiol 12:708267
  | Genomic expression study | C. albicans | |TYE7 |
Beekman CN, et al. (2021) Comparative genomics of white and opaque cell states supports an epigenetic mechanism of phenotypic switching in Candida albicans G3 (Bethesda) 11:jkab001
| Genomic expression study |
Bliss JM, et al. (2021) Transcription Profiles Associated with Inducible Adhesion in Candida parapsilosis mSphere 6:e01071-20
  | Genomic expression study | C. parapsilosis | |CPAR2_200650 |CPAR2_400510 |CPAR2_701230 |PHR1 |
Chew SY, et al. (2021) Transcriptomic and proteomic profiling revealed reprogramming of carbon metabolism in acetate-grown human pathogen Candida glabrata J Biomed Sci 28:1
| Genomic expression study | C. glabrata | |AAT1 |ACO1 |ADH2 |CAGL0H05137g |CAGL0J00451g |CIT1 |CTA1 |ENO1 |FBP1 |GCV1 |GPM1 |HXK2 |ICL1 |IDP2 |MORE |
Fourie R, et al. (2021) Transcriptional response of Candida albicans to Pseudomonas aeruginosa in a polymicrobial biofilm G3 (Bethesda)
| Genomic expression study | C. albicans | |ADH2 |ADH3 |ADH5 |C2_04480W_A |CAT1 |CSA1 |CTA4 |ECE1 |FDH3 |GAL4 |HWP1 |HYR1 |RBT1 |RBT4 |MORE |
Goncalves B, et al. (2021) Revealing Candida glabrata biofilm matrix proteome: global characterization and pH response Biochem J
| Large-scale protein localization | C. glabrata | |ACT1 |AED1 |AHP1 |ALD4 |ARG1 |ARO8 |ASC1 |ATH1 |ATP1 |ATP2 |AWP12 |AWP3 |AWP6 |BMH1(B) |MORE |
Guinea J, et al. (2021) Whole genome sequencing confirms Candida albicans and Candida parapsilosis microsatellite sporadic and persistent clones causing outbreaks of candidemia in neonates Med Mycol
| Other genomic analysis |
Hunsaker EW, et al. (2021) Copper Availability Influences the Transcriptomic Response of Candida albicans to Fluconazole Stress G3 (Bethesda)
| Genomic expression study | C. albicans | |ATX1 |CCC2 |CRD2 |CRP1 |CTR1 |CUP1 |FET3 |MAC1 |SOD6 |
Jakab A, et al. (2021) Transcriptional Profiling of the Candida auris Response to Exogenous Farnesol Exposure mSphere
| Genomic expression study | C. auris | |B9J08_000164 |B9J08_000468 |B9J08_000561 |B9J08_000592 |B9J08_000772 |B9J08_001409 |B9J08_001458 |B9J08_002529 |B9J08_002834 |B9J08_003985 |B9J08_004190 |B9J08_004946 |B9J08_005429 |
Jenull S, et al. (2021) Transcriptome Signatures Predict Phenotypic Variations of Candida auris Front Cell Infect Microbiol 11:662563
| Genomic expression study | C. auris | |B9J08_000164 |B9J08_000270 |
Li P, et al. (2021) Proteomic Analysis of Caspofungin-Induced Responses in Planktonic Cells and Biofilms of Candida albicans Front Microbiol 12:639123
| Large-scale protein detection | C. albicans | |LSP1 |PIL1 |
Liboro K, et al. (2021) Transcriptomic and Metabolomic Analysis Revealed Roles of Yck2 in Carbon Metabolism and Morphogenesis of Candida albicans Front Cell Infect Microbiol 11:636834
| Genomic expression study | C. albicans | |YCK2 |
Min K, et al. (2021) Integrative multi-omics profiling reveals cAMP-independent mechanisms regulating hyphal morphogenesis in Candida albicans PLoS Pathog 17:e1009861
| Other genomic analysis, Other large-scale proteomic analysis, Large-scale phenotype analysis | C. albicans | |BCY1 |CYR1 |
Mixao V, et al. (2021) Extreme diversification driven by parallel events of massive loss of heterozygosity in the hybrid lineage of Candida albicans Genetics 217:iyaa004
| Other genomic analysis |
Moreno-Martinez AE, et al. (2021) High Biofilm Formation of Non-Smooth Candida parapsilosis Correlates with Increased Incorporation of GPI-Modified Wall Adhesins Pathogens 10:493
| Large-scale protein localization | C. parapsilosis | |ALS11 |ALS6 |ALS7 |BGL2 |CHT2 |CHT21 |CHT22 |CPAR2_403880 |CPAR2_701390 |CPAR2_805040 |CRH11 |CSA1 |ECM33 |ECM331 |MORE |
Mukherjee S, et al. (2021) Exploring the druggable proteome of Candida species through comprehensive computational analysis Genomics
| Computational analysis | C. albicans | |ALT1 |ARG3 |ARG8 |ERG4 |HIS5 |LYS9 |
Mundodi V, et al. (2021) Global translational landscape of the Candida albicans morphological transition G3 (Bethesda) 11:jkaa043
| Genomic expression study | C. albicans | |ALG6 |BEM1 |C3_05990C_A |CEK1 |CHS7 |CTA2 |CWH8 |DDC1 |DDR48 |ECE1 |HMS1 |HWP1 |HXK1 |INO2 |MORE |
Munoz JF, et al. (2021) Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris Genetics
| Other genomic analysis | C. auris | |B9J08_000020 |B9J08_001049 |B9J08_001512 |B9J08_001533 |B9J08_001960 |B9J08_002580 |B9J08_004095 |B9J08_004119 |B9J08_004456 |B9J08_004881 |B9J08_004907 |B9J08_005531 |
| | C. albicans | |ERG11 |
O'Meara TR and O'Meara MJ (2021) DeORFanizing Candida albicans Genes using Coexpression mSphere 6:e01245-20
| Computational analysis | C. albicans | |CCJ1 |
Pal SE, et al. (2021) A Candida parapsilosis Overexpression Collection Reveals Genes Required for Pathogenesis J Fungi (Basel) 7:97
| Large-scale phenotype analysis | C. parapsilosis | |CPAR2_100540 |CPAR2_104420 |CPAR2_105250 |CPAR2_107020 |CPAR2_107240 |CPAR2_108840 |CPAR2_109520 |CPAR2_200040 |CPAR2_200390 |CPAR2_201920 |CPAR2_205060 |CPAR2_209240 |CPAR2_209520 |CPAR2_300080 |MORE |
Paudyal A and Vediyappan G (2021) Cell Surface Expression of Nrg1 Protein in Candida auris J Fungi (Basel) 7:262
| Large-scale protein localization | C. auris | |B9J08_005429 |
Santos FJPL, et al. (2021) Transcriptome analysis unveils Gln3 role in amino acids assimilation and fluconazole resistance in Candida glabrata J Microbiol Biotechnol
| Genomic expression study | C. glabrata | |ARO8 |CDR1 |GAT1 |GLN3 |PDH1 |PDR1 |
Singh-Babak SD, et al. (2021) Lineage-specific selection and the evolution of virulence in the Candida clade Proc Natl Acad Sci U S A 118:e2016818118
| Genomic expression study | C. albicans | |CDC19 |ENO1 |FBA1 |GLK1 |GLK4 |GPM1 |HXK2 |PFK1 |PFK2 |PFK26 |PGI1 |PGK1 |TDH3 |TPI1 |
Sircaik S, et al. (2021) The protein kinase Ire1 impacts pathogenicity of Candida albicans by regulating homeostatic adaptation to endoplasmic reticulum stress Cell Microbiol
| Genomic expression study | C. albicans | |IRE1 |
Vaz C, et al. (2021) Mass Spectrometry-Based Proteomic and Immunoproteomic Analyses of the Candida albicans Hyphal Secretome Reveal Diagnostic Biomarker Candidates for Invasive Candidiasis J Fungi (Basel) 7:501
| Large-scale protein detection | C. albicans | |ADE8 |ALS1 |BGL2 |C1_03510C_A |C2_05550W_A |C2_09600C_A |C3_06920W_A |CHT1 |CHT3 |CIP1 |COI1 |CR_09240C_A |ECE1 |ECM33 |MORE |
Vazquez-Fernandez P, et al. (2021) A comparative proteomic analysis of Candida species in response to the oxidizing agent cumene hydroperoxide Arch Microbiol
| Large-scale protein localization |
Vico SH, et al. (2021) The Glyoxylate Cycle Is Involved in White-Opaque Switching in Candida albicans J Fungi (Basel) 7:502
| Large-scale protein detection | C. albicans | |ICL1 |MTLA1 |WOR1 |
Vu BG, et al. (2021) The Candida glabrata Upc2A transcription factor is a global regulator of antifungal drug resistance pathways PLoS Genet 17:e1009582
| Genomic expression study | C. glabrata | |CAGL0F08965g |CAGL0J03916g |CAGL0K03927g |CAGL0K04455g |CAGL0L03828g |ERG10 |ERG13 |ERG2 |ERG4 |ERG5 |ERG6 |UPC2A |
Wang JM, et al. (2021) Intraspecies Transcriptional Profiling Reveals Key Regulators of Candida albicans Pathogenic Traits MBio 12:e00586-21
| Genomic expression study |
Xu Z, et al. (2021) De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays Mol Microbiol 113:1209-1224
| Other genomic analysis | C. glabrata | |AED1 |AWP12 |AWP13 |CAGL0C00253g |CAGL0C00968g |CAGL0C01133g |CAGL0E00231g |CAGL0E01661g |CAGL0G06842g |CAGL0I07293g |CAGL0J01727g |CAGL0J01774g |CAGL0J04114g |CAGL0J04246g |MORE |
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